JCoRe Linnaeus Species Tagger

Uses the Linnaeus software (http://linnaeus.sourceforge.net/) to detect species mentions and map them to NCBI taxonomy IDs. This project contains the UIMA wrapper around the original Linnaeus software but does not include any dictionaries. Since Linnaeus works with different dictionaries (e.g. concrete species name mention recognition, species proxy/clue recognition, ...) each of the different resource has been stored in a project of its own in jcore-projects. The default mention dictionary is stored in the jcore-linneaus-species-dict project, for example.

License	BSD-2-Clause
GroupId	de.julielab
ArtifactId	jcore-linnaeus-species-ae
Last Version	2.5.0
Release Date	May 13, 2020
Type	jar
Description	JCoRe Linnaeus Species Tagger Uses the Linnaeus software (http://linnaeus.sourceforge.net/) to detect species mentions and map them to NCBI taxonomy IDs. This project contains the UIMA wrapper around the original Linnaeus software but does not include any dictionaries. Since Linnaeus works with different dictionaries (e.g. concrete species name mention recognition, species proxy/clue recognition, ...) each of the different resource has been stored in a project of its own in jcore-projects. The default mention dictionary is stored in the jcore-linneaus-species-dict project, for example.
Project URL	https://github.com/JULIELab/jcore-base/tree/master/jcore-linnaeus-species-ae
Project Organization	JULIE Lab Jena, Germany

Download jcore-linnaeus-species-ae

Filename	Size
jcore-linnaeus-species-ae-2.5.0.pom
jcore-linnaeus-species-ae-2.5.0.jar	9 KB
jcore-linnaeus-species-ae-2.5.0-sources.jar	7 KB
jcore-linnaeus-species-ae-2.5.0-javadoc.jar	406 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/de.julielab/jcore-linnaeus-species-ae/ -->
<dependency>
    <groupId>de.julielab</groupId>
    <artifactId>jcore-linnaeus-species-ae</artifactId>
    <version>2.5.0</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/de.julielab/jcore-linnaeus-species-ae/
implementation 'de.julielab:jcore-linnaeus-species-ae:2.5.0'

Gradle Kotlin

// https://jarcasting.com/artifacts/de.julielab/jcore-linnaeus-species-ae/
implementation ("de.julielab:jcore-linnaeus-species-ae:2.5.0")

Apache Buildr

'de.julielab:jcore-linnaeus-species-ae:jar:2.5.0'

Apache Ivy

<dependency org="de.julielab" name="jcore-linnaeus-species-ae" rev="2.5.0">
  <artifact name="jcore-linnaeus-species-ae" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='de.julielab', module='jcore-linnaeus-species-ae', version='2.5.0')
)

Scala SBT

libraryDependencies += "de.julielab" % "jcore-linnaeus-species-ae" % "2.5.0"

Leiningen

[de.julielab/jcore-linnaeus-species-ae "2.5.0"]

Dependencies

compile (6)

Group / Artifact	Type	Version
de.julielab : linnaeus	jar	2.0-JULIELAB-1.0.0
org.slf4j : slf4j-api	jar	1.7.30
de.julielab : jcore-types	jar	2.5.0
de.julielab : jcore-utilities	jar	2.5.0
org.apache.uima : uimaj-core	jar	2.10.4
org.apache.uima : uimafit-core	jar	2.5.0

provided (1)

Group / Artifact	Type	Version
de.julielab : jcore-descriptor-creator	jar	2.5.1

test (1)

Group / Artifact	Type	Version
junit : junit	jar	4.13

Project Modules

There are no modules declared in this project.

JULIE Lab

Friedrich Schiller University's department of computational linguistics

Versions

Version
2.5.0 May 13, 2020
2.4.0 Mar 28, 2019
2.3.10 Jan 3, 2019
2.3.8 Dec 30, 2018
2.3.4 Dec 25, 2018
2.3.3 Dec 10, 2018
2.3.0 Aug 10, 2018