JCoRe PubMed DB Reader

An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse PubMed XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the PubMed/MEDLINE XML schema that was used beginning from 2017. I.e. the root document of a document must be PubmedArticle and not, as it was for MEDLINE until 2017, MedlineCitation.

License	BSD-2-Clause
GroupId	de.julielab
ArtifactId	jcore-pubmed-db-reader
Last Version	2.5.1
Release Date	Mar 29, 2021
Type	jar
Description	JCoRe PubMed DB Reader An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse PubMed XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the PubMed/MEDLINE XML schema that was used beginning from 2017. I.e. the root document of a document must be PubmedArticle and not, as it was for MEDLINE until 2017, MedlineCitation.
Project URL	https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
Project Organization	JULIE Lab, Germany

Download jcore-pubmed-db-reader

Filename	Size
jcore-pubmed-db-reader-2.5.1.pom
jcore-pubmed-db-reader-2.5.1.jar	14 KB
jcore-pubmed-db-reader-2.5.1-sources.jar	14 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/de.julielab/jcore-pubmed-db-reader/ -->
<dependency>
    <groupId>de.julielab</groupId>
    <artifactId>jcore-pubmed-db-reader</artifactId>
    <version>2.5.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/de.julielab/jcore-pubmed-db-reader/
implementation 'de.julielab:jcore-pubmed-db-reader:2.5.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/de.julielab/jcore-pubmed-db-reader/
implementation ("de.julielab:jcore-pubmed-db-reader:2.5.1")

Apache Buildr

'de.julielab:jcore-pubmed-db-reader:jar:2.5.1'

Apache Ivy

<dependency org="de.julielab" name="jcore-pubmed-db-reader" rev="2.5.1">
  <artifact name="jcore-pubmed-db-reader" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='de.julielab', module='jcore-pubmed-db-reader', version='2.5.1')
)

Scala SBT

libraryDependencies += "de.julielab" % "jcore-pubmed-db-reader" % "2.5.1"

Leiningen

[de.julielab/jcore-pubmed-db-reader "2.5.1"]

Dependencies

compile (3)

Group / Artifact	Type	Version
de.julielab : jcore-xml-db-reader	jar	2.5.0
org.apache.uima : uimaj-core	jar	2.10.4
org.apache.uima : uimafit-core	jar	2.5.0

provided (1)

Group / Artifact	Type	Version
de.julielab : jcore-descriptor-creator	jar	2.5.1

test (1)

Group / Artifact	Type	Version
junit : junit	jar	4.13

Project Modules

There are no modules declared in this project.

JULIE Lab

Friedrich Schiller University's department of computational linguistics

Versions

Version
2.5.1 Mar 29, 2021
2.5.0 May 13, 2020
2.4.0 Mar 29, 2019
2.3.10 Jan 3, 2019
2.3.8 Dec 31, 2018
2.3.3 Oct 11, 2018
2.3.2 Sep 24, 2018
2.3.1 Sep 20, 2018