ReCiter-PubMed-Model

A set of classes representing a PubMed article

License

License

GroupId

GroupId

edu.cornell.weill.reciter
ArtifactId

ArtifactId

reciter-pubmed-model
Last Version

Last Version

2.0.2
Release Date

Release Date

Type

Type

jar
Description

Description

ReCiter-PubMed-Model
A set of classes representing a PubMed article
Project URL

Project URL

https://github.com/wcmc-its/ReCiter-PubMed-Model
Project Organization

Project Organization

Weill Cornell Medicine ITS
Source Code Management

Source Code Management

https://github.com/wcmc-its/ReCiter-Pubmed-Model

Download reciter-pubmed-model

How to add to project

<!-- https://jarcasting.com/artifacts/edu.cornell.weill.reciter/reciter-pubmed-model/ -->
<dependency>
    <groupId>edu.cornell.weill.reciter</groupId>
    <artifactId>reciter-pubmed-model</artifactId>
    <version>2.0.2</version>
</dependency>
// https://jarcasting.com/artifacts/edu.cornell.weill.reciter/reciter-pubmed-model/
implementation 'edu.cornell.weill.reciter:reciter-pubmed-model:2.0.2'
// https://jarcasting.com/artifacts/edu.cornell.weill.reciter/reciter-pubmed-model/
implementation ("edu.cornell.weill.reciter:reciter-pubmed-model:2.0.2")
'edu.cornell.weill.reciter:reciter-pubmed-model:jar:2.0.2'
<dependency org="edu.cornell.weill.reciter" name="reciter-pubmed-model" rev="2.0.2">
  <artifact name="reciter-pubmed-model" type="jar" />
</dependency>
@Grapes(
@Grab(group='edu.cornell.weill.reciter', module='reciter-pubmed-model', version='2.0.2')
)
libraryDependencies += "edu.cornell.weill.reciter" % "reciter-pubmed-model" % "2.0.2"
[edu.cornell.weill.reciter/reciter-pubmed-model "2.0.2"]

Dependencies

compile (4)

Group / Artifact Type Version
com.fasterxml.jackson.core : jackson-annotations jar 2.8.4
com.amazonaws : aws-java-sdk-dynamodb jar 1.11.34
io.swagger : swagger-codegen-maven-plugin jar 3.0.0-rc1
com.google.code.gson : gson jar 2.8.5

provided (1)

Group / Artifact Type Version
org.projectlombok : lombok jar 1.16.16

Project Modules

There are no modules declared in this project.

ReCiter-PubMed-Model

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Data model

The following is a sample record from DynamoDB for the PubMedArticle table.

{
  "pmid": 30254045,
  "pubmedarticle": {
    "medlinecitation": {
      "article": {
        "articledate": {
          "day": "25",
          "month": "09",
          "year": "2018"
        },
        "articletitle": "Teaching Manually Assisted Cough to Caregivers of Children With Neuromuscular Disease.",
        "authorlist": [
          {
            "affiliation": "School of Physiotherapy, Australian Catholic University, North Sydney, New South Wales, Australia. [email protected].",
            "forename": "Amelia F",
            "initials": "AF",
            "lastname": "Kan"
          },
          {
            "affiliation": "School of Physiotherapy, Australian Catholic University, North Sydney, New South Wales, Australia.",
            "forename": "Jane M",
            "initials": "JM",
            "lastname": "Butler"
          },
          {
            "affiliation": "Department of Physiotherapy, The Children's Hospital at Westmead, Westmead, New South Wales, Australia; Institute for Neuroscience and Muscle Research, Children's Hospital at Westmead, Westmead, New South Wales, Australia.",
            "forename": "Meghan",
            "initials": "M",
            "lastname": "Hutchence"
          },
          {
            "affiliation": "Disciplines of Genetics and Paediatrics, Sydney Medical School, University of Sydney, Sydney, New South Wales, Australia; Department of Clinical Genetics, The Children's Hospital at Westmead, Westmead, New South Wales, Australia; Neurogenetics/Neuromuscular Clinical Service, The Children's Hospital at Westmead, Westmead, New South Wales, Australia; Clinical Trials Unit, Institute for Neuroscience and Muscle Research, Children's Hospital at Westmead, Westmead, New South Wales, Australia.",
            "forename": "Kristi",
            "initials": "K",
            "lastname": "Jones"
          },
          {
            "affiliation": "Department of Respiratory Medicine, Sydney Children's Hospital Network, Randwick, New South Wales, Australia; Discipline of Paediatrics, School of Women and Children's Health, University of New South Wales, Randwick, New South Wales, Australia.",
            "forename": "John",
            "initials": "J",
            "lastname": "Widger"
          },
          {
            "affiliation": "Department of Physiotherapy, Sydney Children's Hospital Network, Randwick, New South Wales, Australia; School of Women's and Children's Health, University of New South Wales, Randwick, New South Wales, Australia.",
            "forename": "Michael A",
            "initials": "MA",
            "lastname": "Doumit"
          }
        ],
        "elocationid": {
          "elocationid": "10.4187/respcare.06213"
        },
        "journal": {
          "isoAbbreviation": "Respir Care",
          "issn": [
            {
              "issn": "1943-3654",
              "issntype": "Electronic"
            },
            {
              "issn": "0020-1324",
              "issntype": "Linking"
            }
          ],
          "journalissue": {
            "issue": "12",
            "pubdate": {
              "month": "12",
              "year": "2018"
            },
            "volume": "63"
          },
          "title": "Respiratory care"
        },
        "pagination": {
          "medlinepgns": [
            "1520-1527"
          ]
        },
        "publicationAbstract": {
          "abstractTexts": [
            {
              "abstractText": "Cough augmentation techniques are taught by health-care providers to improve secretion clearance and to help prevent respiratory infections in children with neuromuscular disease. There is some evidence of the effectiveness of a manually assisted cough when applied by health-care providers. However, it is unknown whether parents and caregivers may also be effective in applying manually assisted cough. The aim of this study was to evaluate whether parents and caregivers are effective at applying a manually assisted cough to a child with neuromuscular disease after being taught by a health-care provider.",
              "abstractTextLabel": "BACKGROUND",
              "abstractTextNlmCategory": "BACKGROUND"
            },
            {
              "abstractText": "For this prospective cohort study, children and their parents or caregivers were recruited from neuromuscular clinics in the Sydney Children's Hospitals Network. Cough peak flow was the outcome measure for the strength of the child's cough. Children were eligible to participate if their unassisted cough peak flow at baseline was <270 L/min. Parents and caregivers were taught a manually assisted cough by a physiotherapist before being measured. The cough peak flow was measured in the following order: (1) during an unassisted cough as baseline, (2) during a manually assisted cough performed by a physiotherapist, (3) during a manually assisted cough performed by a parent or caregiver, and (4) during an unassisted cough after intervention.",
              "abstractTextLabel": "METHODS",
              "abstractTextNlmCategory": "METHODS"
            },
            {
              "abstractText": "Twenty-eight children (24 boys, 4 girls; mean ± SD age, 12 ± 3 y) completed the study. No clinically or statistically significant changes were found in the cough peak flow after the application of a manually assisted cough by parents or caregivers (95% CI -11 to 11 L/min) or by physiotherapists (95% CI -6 to 14 L/min).",
              "abstractTextLabel": "RESULTS",
              "abstractTextNlmCategory": "RESULTS"
            },
            {
              "abstractText": "Parents and caregivers and health-care providers were ineffective at increasing cough peak flow in children with neuromuscular weakness when applying a manually assisted cough. A single training session was insufficient for a parent or caregiver to be able to apply a manually assisted cough effectively on his or her child with neuromuscular weakness. Further research is warranted to guide recommendations on how best to equip parents and caregivers with the skills to help manage children with neuromuscular disease.",
              "abstractTextLabel": "CONCLUSIONS",
              "abstractTextNlmCategory": "CONCLUSIONS"
            }
          ],
          "copyrightInformation": "Copyright © 2018 by Daedalus Enterprises."
        },
        "publicationtypelist": [
          {
            "publicationtype": "Journal Article"
          }
        ]
      },
      "keywordlist": {
        "keywordlist": [
          {
            "keyword": "cough augmentation"
          },
          {
            "keyword": "cough peak flow"
          },
          {
            "keyword": "manually assisted cough"
          },
          {
            "keyword": "neuromuscular disease"
          }
        ]
      },
      "medlinecitationpmid": {
        "pmid": 30254045
      }
    },
    "pubmeddata": {
      "history": {
        "pubmedPubDate": [
          {
            "pubMedPubDate": {
              "day": "27",
              "month": "9",
              "year": "2018"
            },
            "pubStatus": "pubmed"
          },
          {
            "pubMedPubDate": {
              "day": "27",
              "month": "9",
              "year": "2018"
            },
            "pubStatus": "medline"
          },
          {
            "pubMedPubDate": {
              "day": "27",
              "month": "9",
              "year": "2018"
            },
            "pubStatus": "entrez"
          }
        ]
      }
    }
  }
}
edu.cornell.weill.reciter

Weill Cornell Medicine ITS

Versions

Version
2.0.2
2.0.1