niftiLoader

Package for loading a directory containing MRI data in NIfTI format. The directory to be loaded must contain as many subdirectories as there are classes of MRI data. Each subdirectory name will be used as the class label for the corresponding .nii files in that subdirectory. (This is the same strategy as the one used by WEKA's TextDirectoryLoader.) Currently, the package only reads volume information for the first time slot from each .nii file. The readDoubleVol(short ttt) method from the Nifti1Dataset class (http://niftilib.sourceforge.net/java_api_html/Nifti1Dataset.html) is used to read the data for each volume into a sparse WEKA instance (with ttt=0). For an LxMxN volume (the dimensions must be the same for each .nii file in the directory!), the order of values in the generated instance is [(z_1, y_1, x_1), ..., (z_1, y_1, x_L), (z_1, y_2, x_1), ..., (z_1, y_M, x_L), (z_2, y_1, x_1), ..., (z_N, y_M, x_L)]. If the volume is an image, then only x and y coordinates are used.

License	GNU General Public License 3
Categories	Weka Business Logic Libraries Machine Learning
GroupId	nz.ac.waikato.cms.weka
ArtifactId	nifiLoader
Last Version	1.0.1
Release Date	Dec 9, 2015
Type	jar
Description	niftiLoader Package for loading a directory containing MRI data in NIfTI format. The directory to be loaded must contain as many subdirectories as there are classes of MRI data. Each subdirectory name will be used as the class label for the corresponding .nii files in that subdirectory. (This is the same strategy as the one used by WEKA's TextDirectoryLoader.) Currently, the package only reads volume information for the first time slot from each .nii file. The readDoubleVol(short ttt) method from the Nifti1Dataset class (http://niftilib.sourceforge.net/java_api_html/Nifti1Dataset.html) is used to read the data for each volume into a sparse WEKA instance (with ttt=0). For an LxMxN volume (the dimensions must be the same for each .nii file in the directory!), the order of values in the generated instance is [(z_1, y_1, x_1), ..., (z_1, y_1, x_L), (z_1, y_2, x_1), ..., (z_1, y_M, x_L), (z_2, y_1, x_1), ..., (z_N, y_M, x_L)]. If the volume is an image, then only x and y coordinates are used.
Project URL	http://weka.sourceforge.net/doc.packages/niftiLoader
Project Organization	University of Waikato, Hamilton, NZ
Source Code Management	https://svn.cms.waikato.ac.nz/svn/weka/tags/nifiLoader-1.0.1

Download nifiLoader

Filename	Size
nifiLoader-1.0.1.pom
nifiLoader-1.0.1.jar	38 KB
nifiLoader-1.0.1-tests.jar	803 KB
nifiLoader-1.0.1-test-sources.jar	800 KB
nifiLoader-1.0.1-sources.jar	29 KB
nifiLoader-1.0.1-javadoc.jar	81 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/nz.ac.waikato.cms.weka/nifiLoader/ -->
<dependency>
    <groupId>nz.ac.waikato.cms.weka</groupId>
    <artifactId>nifiLoader</artifactId>
    <version>1.0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/nz.ac.waikato.cms.weka/nifiLoader/
implementation 'nz.ac.waikato.cms.weka:nifiLoader:1.0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/nz.ac.waikato.cms.weka/nifiLoader/
implementation ("nz.ac.waikato.cms.weka:nifiLoader:1.0.1")

Apache Buildr

'nz.ac.waikato.cms.weka:nifiLoader:jar:1.0.1'

Apache Ivy

<dependency org="nz.ac.waikato.cms.weka" name="nifiLoader" rev="1.0.1">
  <artifact name="nifiLoader" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='nz.ac.waikato.cms.weka', module='nifiLoader', version='1.0.1')
)

Scala SBT

libraryDependencies += "nz.ac.waikato.cms.weka" % "nifiLoader" % "1.0.1"

Leiningen

[nz.ac.waikato.cms.weka/nifiLoader "1.0.1"]

Dependencies

compile (1)

Group / Artifact	Type	Version
nz.ac.waikato.cms.weka : weka-dev	jar	[3.7.8,)

test (2)

Group / Artifact	Type	Version
nz.ac.waikato.cms.weka : weka-dev	test-jar	[3.7.8,)
junit : junit	jar	3.8.2

Project Modules

There are no modules declared in this project.

Versions

Version
1.0.1 Dec 9, 2015
1.0.0 Dec 7, 2015