Apache Taverna Server Web Application Core

This is the implementation of the web-app that provides the Taverna Server with its SOAP and REST faces. It relies on the worker process to handle the actual launching of workflow runs.

License	Apache License, Version 2.0
GroupId	org.apache.taverna.server
ArtifactId	taverna-server-webapp
Last Version	3.1.0-incubating
Release Date	Jan 10, 2018
Type	war
Description	Apache Taverna Server Web Application Core This is the implementation of the web-app that provides the Taverna Server with its SOAP and REST faces. It relies on the worker process to handle the actual launching of workflow runs.
Project URL	https://taverna.incubator.apache.org/taverna-server-webapp/
Project Organization	The Apache Software Foundation

Download taverna-server-webapp

Filename	Size
taverna-server-webapp-3.1.0-incubating.pom
taverna-server-webapp-3.1.0-incubating.war	120 MB
taverna-server-webapp-3.1.0-incubating-sources.jar	537 KB
taverna-server-webapp-3.1.0-incubating-javadoc.jar	1 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.apache.taverna.server/taverna-server-webapp/ -->
<dependency>
    <groupId>org.apache.taverna.server</groupId>
    <artifactId>taverna-server-webapp</artifactId>
    <version>3.1.0-incubating</version>
    <type>war</type>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.apache.taverna.server/taverna-server-webapp/
implementation 'org.apache.taverna.server:taverna-server-webapp:3.1.0-incubating'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.apache.taverna.server/taverna-server-webapp/
implementation ("org.apache.taverna.server:taverna-server-webapp:3.1.0-incubating")

Apache Buildr

'org.apache.taverna.server:taverna-server-webapp:war:3.1.0-incubating'

Apache Ivy

<dependency org="org.apache.taverna.server" name="taverna-server-webapp" rev="3.1.0-incubating">
  <artifact name="taverna-server-webapp" type="war" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.apache.taverna.server', module='taverna-server-webapp', version='3.1.0-incubating')
)

Scala SBT

libraryDependencies += "org.apache.taverna.server" % "taverna-server-webapp" % "3.1.0-incubating"

Leiningen

[org.apache.taverna.server/taverna-server-webapp "3.1.0-incubating"]

Dependencies

compile (33)

Group / Artifact	Type	Version
org.webjars : webjars-servlet-2.x	jar	1.5
org.webjars : jquery-ui	jar	1.9.2
org.apache.cxf : cxf-rt-frontend-jaxws	jar	2.7.7
org.apache.cxf : cxf-rt-frontend-jaxrs	jar	2.7.7
org.apache.cxf : cxf-rt-transports-http	jar	2.7.7
commons-logging : commons-logging	jar	1.1.3
commons-io : commons-io	jar	2.6
org.springframework.security : spring-security-core	jar	3.1.4.RELEASE
org.springframework.security : spring-security-web	jar	3.1.4.RELEASE
org.springframework.security : spring-security-config	jar	3.1.4.RELEASE
org.apache.taverna.server : taverna-server-port-description	jar	3.1.0-incubating
org.apache.taverna.server : taverna-server-runinterface	jar	3.1.0-incubating
org.apache.taverna.server : taverna-server-usagerecord	jar	3.1.0-incubating
commons-dbcp : commons-dbcp	jar	1.4
org.datanucleus : javax.jdo	jar	3.2.0-m5
org.datanucleus : datanucleus-core	jar	5.0.0-release
org.datanucleus : datanucleus-rdbms	jar	5.0.0-release
org.apache.jdo : jdo2-core	jar	2.0
joda-time : joda-time	jar	2.9.9
net.sf.mime-util : mime-util	jar	1.2
org.twitter4j : twitter4j-core	jar	[3.0,)
org.aspectj : aspectjrt	jar	1.7.4
org.igniterealtime.smack : smack	jar	3.2.1
org.apache.httpcomponents : httpclient	jar	4.5.3
javax.annotation : jsr250-api	jar	1.0
org.apache.abdera : abdera-core	jar	1.1.3
org.bouncycastle : bcprov-jdk15on	jar	1.49
org.springframework : spring-context-support	jar	3.2.5.RELEASE
org.apache.velocity : velocity	jar	1.7
org.apache.cxf : cxf-rt-rs-extension-providers	jar	2.7.7
org.apache.taverna.language : taverna-scufl2-api	jar	0.15.1-incubating
org.apache.commons : commons-compress	jar	1.4.1
com.google.code.findbugs : jsr305	jar	1.3.7

provided (4)

Group / Artifact	Type	Version
org.apache.taverna.server : taverna-server-worker	jar	3.1.0-incubating
org.apache.taverna.server : taverna-server-unix-forker	jar	3.1.0-incubating
org.apache.taverna.server : taverna-server-rmidaemon	jar	3.1.0-incubating
javax.servlet : servlet-api	jar	2.5

runtime (12)

Group / Artifact	Type	Version
org.ow2.asm : asm	jar	5.1
org.springframework : spring-aop	jar	3.2.5.RELEASE
org.apache.derby : derby	jar	10.10.1.1
org.datanucleus : datanucleus-api-jdo	jar	5.0.0-release
cglib : cglib-nodep	jar	3.2.4
org.igniterealtime.smack : smackx	jar	3.2.1
org.apache.abdera : abdera-parser	jar	1.1.3
org.aspectj : aspectjweaver	jar	1.7.4
javax.mail : mail	jar	1.4.4
org.codehaus.jettison : jettison	jar	1.3.7
org.apache.taverna.language : taverna-scufl2-t2flow	jar	0.15.1-incubating
org.apache.taverna.language : taverna-scufl2-wfbundle	jar	0.15.1-incubating

test (2)

Group / Artifact	Type	Version
org.springframework : spring-test	jar	3.2.5.RELEASE
junit : junit	jar	4.11

Project Modules

There are no modules declared in this project.

Taverna Project Retired

tl;dr: The Taverna code base is no longer maintained and is provided here for archival purposes.

From 2014 till 2020 this code base was maintained by the Apache Incubator project Apache Taverna (incubating) (see web archive and podling status).

In 2020 the Taverna community voted to retire Taverna as a project and withdraw the code base from the Apache Software Foundation.

This code base remains available under the Apache License 2.0 (see License below), but is now simply called Taverna rather than Apache Taverna (incubating).

While the code base is no longer actively maintained, Pull Requests are welcome to the GitHub organization taverna, which may infrequently be considered by remaining volunteer caretakers.

Previous releases

Releases 2015-2018 during incubation at Apache Software Foundation are available from the ASF Download Archive https://archive.apache.org/dist/incubator/taverna/

Releases 2014 from the University of Manchester are on BitBucket https://bitbucket.org/taverna/

Releases 2009-2013 from myGrid are on LaunchPad https://launchpad.net/taverna/

Releases 2003-2009 are on SourceForge https://sourceforge.net/projects/taverna/files/taverna/

Binary JARs for Taverna are available from Maven Central https://repo.maven.apache.org/maven2/org/apache/taverna/ or the myGrid Maven repository https://repository.mygrid.org.uk/

Taverna Server

REST/WSDL web service for executing Taverna workflows.

License

• (c) 2007-2014 University of Manchester
• (c) 2014-2020 Apache Software Foundation

This product includes software developed at The Apache Software Foundation.

Licensed under the Apache License 2.0, see the file LICENSE for details.

The file NOTICE contain any additional attributions and details about embedded third-party libraries and source code.

Contribute

Any contributions received are assumed to be covered by the Apache License 2.0.

Build prerequisites

• Java 1.8
• Apache Maven 3.2.5 or newer (older versions probably also work)

Building

To build, use

mvn clean install

This will build each module and run their tests.

You should then find taverna-server.war in the folder taverna-server-webapp/target/

Skipping tests

To skip the tests (these can be timeconsuming), use:

mvn clean install -DskipTests

If you are modifying this source code independent of the Taverna project, you may not want to run the Rat Maven plugin that enforces Apache headers in every source file - to disable it, try:

mvn clean install -Drat.skip=true

Documentation

https://taverna.incubator.apache.org/documentation/server/

• Introduction
• Installing
• Using

Export restrictions

This distribution includes cryptographic software. The country in which you currently reside may have restrictions on the import, possession, use, and/or re-export to another country, of encryption software. BEFORE using any encryption software, please check your country's laws, regulations and policies concerning the import, possession, or use, and re-export of encryption software, to see if this is permitted. See http://www.wassenaar.org/ for more information.

The U.S. Government Department of Commerce, Bureau of Industry and Security (BIS), has classified this software as Export Commodity Control Number (ECCN) 5D002.C.1, which includes information security software using or performing cryptographic functions with asymmetric algorithms. The form and manner of this Apache Software Foundation distribution makes it eligible for export under the License Exception ENC Technology Software Unrestricted (TSU) exception (see the BIS Export Administration Regulations, Section 740.13) for both object code and source code.

The following provides more details on the included cryptographic software:

• Taverna Server's CertificateChainFetcher uses Java Secure Socket Extension (JSS) to pre-fetch certificates of SSL-secured web services accessed by Taverna workflows.
• Taverna Server's support for propagating username/password credentials in SecurityContextFactory relies on BouncyCastle bcprov encryption library and Java Cryptography Extension (JCE) to generate a keystore for Taverna Command-line tool. The JCE Unlimited Strength Jurisdiction Policy may need to be installed separately.
• Taverna Server may interact with the credential manager support in Taverna Command-line Tool to provide a keystore of client credentials and trusted certificates for SSL-secured web services.
• After building, the taverna-server-webapp/target/taverna-server.war will include dependencies that are covered by export restrictions, including:
  BouncyCastle bcprov encryption library, Apache HttpComponents Core and Client, Apache Derby, Jetty, Apache WSS4J, Apache XML Security for Java, Open SAML Java, Taverna Language, Taverna OSGi, Taverna Engine, Taverna Common Activities, and Taverna Command-line Tool.

The Apache Software Foundation

Versions

Version
3.1.0-incubating Jan 10, 2018