Eureka! Clinical Analytics Service

Eureka! Clinical Analytics Services is the middle services layer of the Eureka! Clinical Analytics application.

License	Apache License, Version 2.0 GNU General Public License, Version 3
Categories	CLI User Interface Eureka Container Microservices
GroupId	org.eurekaclinical
ArtifactId	eurekaclinical-analytics-service
Last Version	3.1-Alpha-5
Release Date	Apr 16, 2021
Type	war
Description	Eureka! Clinical Analytics Service Eureka! Clinical Analytics Services is the middle services layer of the Eureka! Clinical Analytics application.
Project Organization	Emory University
Source Code Management	https://github.com/eurekaclinical/eurekaclinical-analytics-service.git

Download eurekaclinical-analytics-service

Filename	Size
eurekaclinical-analytics-service-3.1-Alpha-5.pom
eurekaclinical-analytics-service-3.1-Alpha-5.war	19 MB
eurekaclinical-analytics-service-3.1-Alpha-5-sources.jar	203 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.eurekaclinical/eurekaclinical-analytics-service/ -->
<dependency>
    <groupId>org.eurekaclinical</groupId>
    <artifactId>eurekaclinical-analytics-service</artifactId>
    <version>3.1-Alpha-5</version>
    <type>war</type>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.eurekaclinical/eurekaclinical-analytics-service/
implementation 'org.eurekaclinical:eurekaclinical-analytics-service:3.1-Alpha-5'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.eurekaclinical/eurekaclinical-analytics-service/
implementation ("org.eurekaclinical:eurekaclinical-analytics-service:3.1-Alpha-5")

Apache Buildr

'org.eurekaclinical:eurekaclinical-analytics-service:war:3.1-Alpha-5'

Apache Ivy

<dependency org="org.eurekaclinical" name="eurekaclinical-analytics-service" rev="3.1-Alpha-5">
  <artifact name="eurekaclinical-analytics-service" type="war" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.eurekaclinical', module='eurekaclinical-analytics-service', version='3.1-Alpha-5')
)

Scala SBT

libraryDependencies += "org.eurekaclinical" % "eurekaclinical-analytics-service" % "3.1-Alpha-5"

Leiningen

[org.eurekaclinical/eurekaclinical-analytics-service "3.1-Alpha-5"]

Dependencies

compile (13)

Group / Artifact	Type	Version
org.eurekaclinical : javautil	jar	4.5
org.eurekaclinical : protempa-framework	jar	5.2-Alpha-2
org.eurekaclinical : eureka-client	jar	5.1-Alpha-4
org.freemarker : freemarker	jar	2.3.29
commons-io : commons-io	jar	2.6
org.apache.commons : commons-lang3	jar	3.9
org.jasig.cas.client : cas-client-core	jar	3.2.1
org.eurekaclinical : eurekaclinical-protempa-client	jar	3.1-Alpha-4
org.eurekaclinical : eurekaclinical-standard-apis	jar	4.1-Alpha-1
org.eurekaclinical : eurekaclinical-common	jar	5.1-Alpha-1
com.sun.xml.bind : jaxb-core	jar	2.3.0.1
javax.xml.bind : jaxb-api	jar	2.3.1
com.sun.xml.bind : jaxb-impl	jar	2.3.1

provided (1)

Group / Artifact	Type	Version
com.sun.mail : javax.mail	jar	1.6.2

test (2)

Group / Artifact	Type	Version
com.sun.jersey.jersey-test-framework : jersey-test-framework-grizzly2	jar	1.19.4
com.h2database : h2	jar	1.4.193

Project Modules

There are no modules declared in this project.

Eureka! Clinical Analytics Service

Georgia Clinical and Translational Science Alliance (Georgia CTSA), Emory University, Atlanta, GA

What does it do?

It provides backend services for managing phenotypes, cohorts and running phenotyping jobs.

Latest release:

Version 2.0

Support the new job modes, and update dependencies.

Version 1.0

This service is a refactoring of the eureka-services module of the eureka project. It replaces the eureka-services module. The current functionality is the same as in the last release of the eureka project.

Build requirements

• Oracle Java JDK 8
• Maven 3.2.5 or greater

Runtime requirements

• Oracle Java JRE 8
• Tomcat 7
• Also running
  • The eurekaclinical-analytics-webapp war
  • The eurekaclinical-protempa-service war
  • The eurekaclinical-user-webapp war
  • The eurekaclinical-user-service war
  • The cas-server war

REST APIs

Building it

See the parent project's README.md.

Performing system tests

See the parent project's README.md.

Installation

Configuration

This webapp is configured using a properties file located at /etc/eureka/application.properties. It supports the following properties:

• cas.url: https://hostname.of.casserver:port/cas-server
• eureka.common.callbackserver: https://hostname:port
• eureka.common.demomode: true or false depending on whether to act like a demonstration; default is false.
• eureka.common.ephiprohibited: true or false depending on whether to display that managing ePHI is prohibited; default is true.
• eureka.support.uri: URI link for contacting support. Could be http, https, or mailto.
• eureka.support.uri.name: Display name of the URI link for contacting support.
• eureka.services.url: URL of the server running the services layer; default is https://localhost:8443/eurekaclinical-analytics-service.
• eureka.services.callbackserver: URL of the server running the services layer; default is https://localhost:8443.
• eureka.services.defaultprops: concept subtrees to show in the concept tree: default is Patient PatientDetails Encounter ICD9:Diagnoses ICD9:Procedures ICD10:Diagnoses ICD10:Procedures LAB:LabTest MED:medications VitalSign

A Tomcat restart is required to detect any changes to the configuration file.

WAR installation

1. Stop Tomcat.
2. Remove any old copies of the unpacked war from Tomcat's webapps directory.
3. Copy the warfile into the Tomcat webapps directory, renaming it to remove the version if necessary. For example, rename eurekaclinical-analytics-service-1.0.war to eurekaclinical-analytics-service.war.
4. Start Tomcat.

Maven dependency

<dependency>
    <groupId>org.eurekaclinical</groupId>
    <artifactId>eurekaclinical-analytics-service</artifactId>
    <version>version</version>
</dependency>

Developer documentation

• Javadoc for latest development release

Getting help

Feel free to contact us at [email protected].

Eureka! Clinical

Microservices for clinical and translational research

Versions

Version
3.1-Alpha-5 Apr 16, 2021
3.1-Alpha-4 Jan 26, 2021
3.1-Alpha-3 Nov 16, 2020
3.1-Alpha-2 Aug 13, 2020
3.0 Dec 6, 2019
3.0-Alpha-3 Nov 1, 2019
3.0-Alpha-1 Jan 12, 2019
2.1-Alpha-2 Oct 9, 2018
2.1-Alpha-1 Sep 28, 2018
2.0 Sep 21, 2018
2.0-Beta-3 Sep 1, 2018
2.0-Beta-2 Aug 29, 2018
2.0-Beta-1 Aug 25, 2018
1.1-Beta-11 Aug 11, 2018
1.1-Beta-10 Aug 7, 2018
1.1-Beta-9 Aug 4, 2018
1.1-Beta-8 Aug 4, 2018
1.1-Beta-7 Aug 4, 2018
1.1-Beta-6 Jul 26, 2018
1.1-Beta-5 Jul 25, 2018
1.1-Beta-4 Jul 25, 2018
1.1-Beta-3 Jul 17, 2018
1.1-Beta-2 Jul 17, 2018
1.1-Beta-1 Jul 16, 2018
1.0 Jun 21, 2018
1.0-Alpha-2 Apr 18, 2018
1.0-Alpha-1 Apr 10, 2018