i2b2 Export Service

A service that provides REST endpoints for the i2b2 data export plugin. It supports exporting an i2b2 patient set with a user-defined configuration, as well as saving configurations.

License	Apache License, Version 2.0
Categories	CLI User Interface Eureka Container Microservices
GroupId	org.eurekaclinical
ArtifactId	i2b2-export-service
Last Version	1.1-Alpha-9
Release Date	Aug 1, 2016
Type	war
Description	i2b2 Export Service A service that provides REST endpoints for the i2b2 data export plugin. It supports exporting an i2b2 patient set with a user-defined configuration, as well as saving configurations.
Project Organization	Emory University

Download i2b2-export-service

Filename	Size
i2b2-export-service-1.1-Alpha-9.pom
i2b2-export-service-1.1-Alpha-9.war	22 MB
i2b2-export-service-1.1-Alpha-9-src.zip	141 KB
i2b2-export-service-1.1-Alpha-9-src.tar.gz	54 KB
i2b2-export-service-1.1-Alpha-9-sources.jar	89 KB
i2b2-export-service-1.1-Alpha-9-javadoc.jar	336 KB
i2b2-export-service-1.1-Alpha-9-bin.zip	22 MB
i2b2-export-service-1.1-Alpha-9-bin.tar.gz	22 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/ -->
<dependency>
    <groupId>org.eurekaclinical</groupId>
    <artifactId>i2b2-export-service</artifactId>
    <version>1.1-Alpha-9</version>
    <type>war</type>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/
implementation 'org.eurekaclinical:i2b2-export-service:1.1-Alpha-9'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/
implementation ("org.eurekaclinical:i2b2-export-service:1.1-Alpha-9")

Apache Buildr

'org.eurekaclinical:i2b2-export-service:war:1.1-Alpha-9'

Apache Ivy

<dependency org="org.eurekaclinical" name="i2b2-export-service" rev="1.1-Alpha-9">
  <artifact name="i2b2-export-service" type="war" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.eurekaclinical', module='i2b2-export-service', version='1.1-Alpha-9')
)

Scala SBT

libraryDependencies += "org.eurekaclinical" % "i2b2-export-service" % "1.1-Alpha-9"

Leiningen

[org.eurekaclinical/i2b2-export-service "1.1-Alpha-9"]

Dependencies

compile (5)

Group / Artifact	Type	Version
org.eurekaclinical : eurekaclinical-common	jar	1.0-Alpha-8
org.eurekaclinical : i2b2-client	jar	1.0-Alpha-3
net.sf.opencsv : opencsv	jar	2.3
commons-io : commons-io	jar	2.4
org.eurekaclinical : javautil	jar	3.0-Alpha-7

test (2)

Group / Artifact	Type	Version
com.sun.jersey.jersey-test-framework : jersey-test-framework-grizzly2	jar	1.17.1
com.h2database : h2	jar	1.4.185

Project Modules

There are no modules declared in this project.

I2b2 Export

Atlanta Clinical and Translational Science Institute (ACTSI), Emory University, Atlanta, GA

What does it do?

It is an i2b2 plugin and Java web service for exporting patient data to CSV files. This project includes three modules:

• i2b2-export-plugin: the web client plugin that the user interacts with
• i2b2-export-service: the Java service that manages users' export configurations and communicates with i2b2 to retrieve data
• i2b2-export-package: packages up the plugin and service into a single archive for distribution

Version 1.1 development series

Latest release:

The 1.1 development series will migrate this package to the Eureka! Clinical build system.

Version history

Version 1.0

Initial release.

Build requirements

• Oracle Java JDK 8
• Maven 3.2.5 or greater

Runtime requirements

• Oracle Java JRE 8
• Tomcat 7 (for i2b2-export-service)
• i2b2 version 1.7

Building it

The project uses the maven build tool. Typically, you build it by invoking mvn clean install at the command line. For simple file changes, not additions or deletions, you can usually use mvn install. See https://github.com/eurekaclinical/dev-wiki/wiki/Building-Eureka!-Clinical-projects for more details.

Installation

See the READMEs for the i2b2-export-plugin and i2b2-export-service modules for installation instructions.

Getting help

Feel free to contact us at [email protected].

Eureka! Clinical

Microservices for clinical and translational research

Versions

Version
1.1-Alpha-9 Aug 1, 2016
1.1-Alpha-8 Jul 31, 2016
1.1-Alpha-7 Feb 19, 2016
1.1-Alpha-6 Dec 18, 2015
1.1-Alpha-5 Dec 18, 2015
1.1-Alpha-4 Dec 18, 2015
1.1-Alpha-3 Dec 12, 2015
1.1-Alpha-2 Dec 11, 2015
1.1-Alpha-1 Dec 11, 2015