spark-bam
Process BAM files using Apache Spark and HTSJDK; extends/improves hadoop-bam.
Full docs: http://hammerlab.org/spark-bam/
To build them locally:
cd docs
jekyll serve -H 0.0.0.0
License |
License |
---|---|
GroupId | GroupIdorg.hammerlab.bam |
ArtifactId | ArtifactIdcheck_2.11 |
Last Version | Last Version1.2.0-M1 |
Release Date | Release Date |
Type | Typejar |
Description |
Descriptioncheck
check
|
Project URL |
Project URL |
Project Organization |
Project Organizationorg.hammerlab.bam |
Source Code Management |
Source Code Management |
Filename | Size |
---|---|
check_2.11-1.2.0-M1.pom | |
check_2.11-1.2.0-M1.jar | 690 KB |
check_2.11-1.2.0-M1-sources.jar | 35 KB |
check_2.11-1.2.0-M1-javadoc.jar | 877 KB |
Browse |
<!-- https://jarcasting.com/artifacts/org.hammerlab.bam/check_2.11/ -->
<dependency>
<groupId>org.hammerlab.bam</groupId>
<artifactId>check_2.11</artifactId>
<version>1.2.0-M1</version>
</dependency>
// https://jarcasting.com/artifacts/org.hammerlab.bam/check_2.11/
implementation 'org.hammerlab.bam:check_2.11:1.2.0-M1'
// https://jarcasting.com/artifacts/org.hammerlab.bam/check_2.11/
implementation ("org.hammerlab.bam:check_2.11:1.2.0-M1")
'org.hammerlab.bam:check_2.11:jar:1.2.0-M1'
<dependency org="org.hammerlab.bam" name="check_2.11" rev="1.2.0-M1">
<artifact name="check_2.11" type="jar" />
</dependency>
@Grapes(
@Grab(group='org.hammerlab.bam', module='check_2.11', version='1.2.0-M1')
)
libraryDependencies += "org.hammerlab.bam" % "check_2.11" % "1.2.0-M1"
[org.hammerlab.bam/check_2.11 "1.2.0-M1"]
Group / Artifact | Type | Version |
---|---|---|
org.scala-lang : scala-library | jar | 2.11.12 |
org.hammerlab : bgzf_2.11 | jar | 1.2.0-M1 |
org.hammerlab.bam : test-bams_2.11 | jar | 1.1.0-M1 |
org.hammerlab : bytes_2.11 | jar | 1.2.0 |
org.hammerlab.cli : base_2.11 | jar | 1.0.0 |
com.github.alexarchambault : case-app_2.11 | jar | 2.0.0-M3 |
org.typelevel : cats-core_2.11 | jar | 1.0.1 |
org.hammerlab : channel_2.11 | jar | 1.5.1 |
com.github.samtools : htsjdk | jar | 2.9.1 |
org.hammerlab : iterator_2.11 | jar | 2.2.0 |
org.hammerlab.genomics : loci_2.11 | jar | 2.2.0 |
org.hammerlab : magic-rdds_2.11 | jar | 4.2.3 |
org.hammerlab : io_2.11 | jar | 5.1.1 |
org.hammerlab : paths_2.11 | jar | 1.5.0 |
org.seqdoop : hadoop-bam | jar | 7.9.0 |
org.clapper : grizzled-slf4j_2.11 | jar | 1.3.1 |
org.hammerlab : spark-util_2.11 | jar | 3.0.0 |
com.esotericsoftware.kryo : kryo | jar | 2.24.0 |
Group / Artifact | Type | Version |
---|---|---|
org.apache.spark : spark-core_2.11 | jar | 2.2.1 |
org.apache.hadoop : hadoop-client | jar | 2.7.3 |
Group / Artifact | Type | Version |
---|---|---|
org.scalatest : scalatest_2.11 | jar | 3.0.4 |
org.hammerlab.test : base_2.11 | jar | 1.0.1 |
org.hammerlab.cli : base_2.11 | jar | 1.0.0 |
org.hammerlab.genomics : loci_2.11 | jar | 2.2.0 |
org.hammerlab : spark-tests_2.11 | jar | 2.3.3 |
Process BAM files using Apache Spark and HTSJDK; extends/improves hadoop-bam.
Full docs: http://hammerlab.org/spark-bam/
To build them locally:
cd docs
jekyll serve -H 0.0.0.0