utils

License	Apache 2.0
GroupId	org.hammerlab.genomics
ArtifactId	utils_2.11
Last Version	1.3.2
Release Date	Jun 17, 2018
Type	jar
Description	utils utils
Project URL	https://github.com/hammerlab/genomic-utils
Project Organization	org.hammerlab.genomics
Source Code Management	https://github.com/hammerlab/genomic-utils

Download utils_2.11

Filename	Size
utils_2.11-1.3.2.pom
utils_2.11-1.3.2.jar	27 KB
utils_2.11-1.3.2-tests.jar	14 KB
utils_2.11-1.3.2-tests-sources.jar	1 KB
utils_2.11-1.3.2-tests-javadoc.jar	391 KB
utils_2.11-1.3.2-sources.jar	4 KB
utils_2.11-1.3.2-javadoc.jar	376 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.hammerlab.genomics/utils_2.11/ -->
<dependency>
    <groupId>org.hammerlab.genomics</groupId>
    <artifactId>utils_2.11</artifactId>
    <version>1.3.2</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.hammerlab.genomics/utils_2.11/
implementation 'org.hammerlab.genomics:utils_2.11:1.3.2'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.hammerlab.genomics/utils_2.11/
implementation ("org.hammerlab.genomics:utils_2.11:1.3.2")

Apache Buildr

'org.hammerlab.genomics:utils_2.11:jar:1.3.2'

Apache Ivy

<dependency org="org.hammerlab.genomics" name="utils_2.11" rev="1.3.2">
  <artifact name="utils_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.hammerlab.genomics', module='utils_2.11', version='1.3.2')
)

Scala SBT

libraryDependencies += "org.hammerlab.genomics" % "utils_2.11" % "1.3.2"

Leiningen

[org.hammerlab.genomics/utils_2.11 "1.3.2"]

Dependencies

compile (4)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.samtools : htsjdk	jar	2.9.1
org.scala-lang : scala-reflect	jar	2.11.12
com.esotericsoftware.kryo : kryo	jar	2.24.0

provided (2)

Group / Artifact	Type	Version
org.apache.spark : spark-core_2.11	jar	2.2.1
org.apache.hadoop : hadoop-client	jar	2.7.3

test (3)

Group / Artifact	Type	Version
org.scalatest : scalatest_2.11	jar	3.0.4
org.hammerlab.test : base_2.11	jar	1.0.1
org.hammerlab : spark-tests_2.11	jar	2.3.3

Project Modules

There are no modules declared in this project.

genomic-utils

Utilities for working with genomic bases, cigar strings, and phred scores.

• Bases wraps a Vector[Base], and implements BasesBuffer, with Int length
  • well-suited for sub-contig-sized genomic-sequences, e.g. reads.
• BasesBuffer is a more general interface that can also be implemented for contig-sized sequences (often with Long length); see Contig.
• Base wraps a Byte, and only a maximum of 5 are instantiated (A, C, G, T, and N).
• All "wrapping" referenced above uses value classes and carries no run-time cost.

Hammer Lab

We're a lab working to understand and improve the immune response to cancer

Versions

Version
1.3.2 Jun 17, 2018
1.3.1 Aug 7, 2017
1.3.0 Aug 6, 2017
1.2.3 Jun 20, 2017
1.2.2 Apr 3, 2017
1.2.1 Mar 13, 2017
1.2.0 Feb 5, 2017
1.1.1 Jan 3, 2017
1.1.0 Jan 2, 2017
1.0.0 Dec 10, 2016