BioCommons

The BioCommons library contains classes to work with 2D and 3D structural bioinformatics data. There are parsers for PDB and mmCIF files and many formats of 2D structure with classifications and notations used in the literature, as well as algorithms implementations.

License	MIT License
GroupId	pl.poznan.put
ArtifactId	BioCommons
Last Version	3.0.9
Release Date	Mar 25, 2022
Type	jar
Description	BioCommons The BioCommons library contains classes to work with 2D and 3D structural bioinformatics data. There are parsers for PDB and mmCIF files and many formats of 2D structure with classifications and notations used in the literature, as well as algorithms implementations.
Project URL	https://github.com/tzok/BioCommons
Source Code Management	https://github.com/tzok/BioCommons/tree/master

Download BioCommons

Filename	Size
BioCommons-3.0.9.pom
BioCommons-3.0.9.jar	684 KB
BioCommons-3.0.9-sources.jar	391 KB
BioCommons-3.0.9-javadoc.jar	1 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/pl.poznan.put/BioCommons/ -->
<dependency>
    <groupId>pl.poznan.put</groupId>
    <artifactId>BioCommons</artifactId>
    <version>3.0.9</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/pl.poznan.put/BioCommons/
implementation 'pl.poznan.put:BioCommons:3.0.9'

Gradle Kotlin

// https://jarcasting.com/artifacts/pl.poznan.put/BioCommons/
implementation ("pl.poznan.put:BioCommons:3.0.9")

Apache Buildr

'pl.poznan.put:BioCommons:jar:3.0.9'

Apache Ivy

<dependency org="pl.poznan.put" name="BioCommons" rev="3.0.9">
  <artifact name="BioCommons" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='pl.poznan.put', module='BioCommons', version='3.0.9')
)

Scala SBT

libraryDependencies += "pl.poznan.put" % "BioCommons" % "3.0.9"

Leiningen

[pl.poznan.put/BioCommons "3.0.9"]

Dependencies

compile (21)

Group / Artifact	Type	Version
com.fasterxml.jackson.core : jackson-annotations	jar	2.13.2
com.fasterxml.jackson.core : jackson-databind	jar	2.13.2
com.google.code.findbugs : jsr305	jar	3.0.2
commons-io : commons-io	jar	2.11.0
org.apache.commons : commons-collections4	jar	4.4
org.apache.commons : commons-exec	jar	1.3
org.apache.commons : commons-lang3	jar	3.12.0
org.apache.commons : commons-math3	jar	3.6.1
org.apache.xmlgraphics : batik-anim	jar	1.14
org.apache.xmlgraphics : batik-awt-util	jar	1.14
org.apache.xmlgraphics : batik-bridge	jar	1.14
org.apache.xmlgraphics : batik-codec	jar	1.14
org.apache.xmlgraphics : batik-gvt	jar	1.14
org.apache.xmlgraphics : batik-svggen	jar	1.14
org.apache.xmlgraphics : batik-transcoder	jar	1.14
org.apache.xmlgraphics : batik-util	jar	1.14
org.apache.xmlgraphics : fop	jar	2.7
org.biojava : biojava-core	jar	5.4.0
org.biojava : biojava-structure	jar	5.4.0
org.jumpmind.symmetric : symmetric-csv	jar	3.5.19
org.slf4j : slf4j-api	jar	1.7.36

provided (1)

Group / Artifact	Type	Version
org.immutables : value	jar	2.9.0

test (6)

Group / Artifact	Type	Version
ch.qos.logback : logback-classic	jar	1.2.11
junit : junit	jar	4.13.2
org.hamcrest : hamcrest-core	jar	2.2
org.powermock : powermock-api-mockito2	jar	2.0.9
org.powermock : powermock-core	jar	2.0.9
org.powermock : powermock-module-junit4	jar	2.0.9

Project Modules

There are no modules declared in this project.

Versions

Version
3.0.9 Mar 25, 2022
3.0.8 Mar 25, 2022
3.0.7 Jan 18, 2022
3.0.6 Dec 21, 2021
3.0.5 Dec 21, 2021
3.0.4 Nov 3, 2021
3.0.3 Nov 3, 2021
3.0.2 Mar 4, 2021
3.0.1 Oct 21, 2020