JarCasting
JarCasting JarCasting

Project Group: se.lth.immun

se.lth.immun:Xml

 se.lth.immun : TraML

Library for TraML

Last Version: 2.0.2

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se.lth.immun:Graphs

 se.lth.immun : Graphs

Graphs library

Last Version: 1.0.1

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se.lth.immun:Xml

 se.lth.immun : Xml

Library for common Xml operations

Last Version: 1.3.1

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se.lth.immun:MzML

 se.lth.immun : MzML

Fast sequential library for reading MzML. Handles all regular variants of the standard mzML format including .gz and numpress

Last Version: 1.3.6

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se.lth.immun:XLMasterFormat

 se.lth.immun : XLMasterFormat

Format for joining information from Kojak, Percolator and Taxlink.

Last Version: 0.1.1

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se.lth.immun:Proteins

 se.lth.immun : Proteins

Library for general purpose in silico chemistry, mainly intended for mass spectrometry proteomics computations.

Last Version: 1.3.3

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se.lth.immun:MSDataProtocol

 se.lth.immun : MSDataProtocol

Small protocol for transfering MS data.

Last Version: 0.4.0

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se.lth.immun:DianaLib

 se.lth.immun : DianaLib

Library for performing the DIANA DIA-MS targeted analysis.

Last Version: 2.0.0

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se.lth.immun:ExtendedSeparatedValues

 se.lth.immun : ExtendedSeparatedValues

Library for handling Extended Separated Values (.esv) files.

Last Version: 1.0.0

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se.lth.immun:MSDataProtocolActors

 se.lth.immun : MSDataProtocolActors

Akka Actor based library for for sending and receiving MSDataProtocol data.

Last Version: 0.4.0

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se.lth.immun:Math

 se.lth.immun : Math

Maths library. No longer maintained. Avoid. Use something else. Submitted for compatibility reasons.

Last Version: 1.3.0

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se.lth.immun:MsNumpress

 se.lth.immun : MsNumpress

Set of numerical compression algorithms called MS-Numpress. Give near-lossless compression down to 2e-4 or 2e-9 depending on datatype

Last Version: 0.1.21

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se.lth.immun:Collections

 se.lth.immun : Collections

Special purpose data collections, implemented in scala

Last Version: 1.0.0

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se.lth.immun:MarkovChain

 se.lth.immun : MarkovChain

Library for fast markov chain computations using dynamic programming tables

Last Version: 1.0.0

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se.lth.immun:Proteomics

 se.lth.immun : Proteomics

Library related to the Proteins library. Probably deprecated or redundant. Included for backwards compatibility

Last Version: 1.0.0

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se.lth.immun:SalvatorDenoise

 se.lth.immun : SalvatorDenoise

Code for MS data smoothing and noise rejection by Wavelet filters. Based of work by Salvatore Cappadona.

Last Version: 1.0.0

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se.lth.immun:Signal

 se.lth.immun : Signal

Code for data smoothing and signal processing. Intended for mass spectrometry proteomics application.

Last Version: 1.0.1

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se.lth.immun:MSFragmentationProtocol

 se.lth.immun : MSFragmentationProtocol

Proto-buf based protocol for storing MS fragmentation data.

Last Version: 0.5.2

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se.lth.immun:MSFeatureProtocol

 se.lth.immun : MSFeatureProtocol

Protocol for proto-buf based binary MS feature (isotope pattern) data.

Last Version: 0.1.0

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se.lth.immun:Files

 se.lth.immun : Files

Utility classes for path manipulation

Last Version: 0.8.0

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se.lth.immun:IRT

 se.lth.immun : IRT

Functionality for computation of retention time normalization maps, and plotting of the generated maps

Last Version: 1.0.0

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se.lth.immun:MsNumpressCollections

 se.lth.immun : MsNumpressCollections

Library of MS-Numpress backed collections. I hoped for higher performance because of smaller memory footprint, but was dissapointed.

Last Version: 1.0.0

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se.lth.immun:UniMod

 se.lth.immun : UniMod

Java implementation of the UniMod database of protein modifications. Extends se.lth.immun.Proteins.

Last Version: 1.3.3

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se.lth.immun:XLink

 se.lth.immun : XLink

Scala library for the representation of crosslinked peptides. Extends se.lth.immun.Proteins.

Last Version: 0.3.4

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se.lth.immun:MsFragmentationIO

 se.lth.immun : MsFragmentationIO

Scala io functionality for reading and writing proto-buf based binary MS fragmentation data.

Last Version: 0.5.2

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se.lth.immun:MsFeatureIO

 se.lth.immun : MsFeatureIO

IO functionality for reading and writing proto-buf based binary MS feature (isotope pattern) data.

Last Version: 0.2.0

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