orbit-image-analysis

Orbit, a versatile image analysis software for biological image-based quantification

License	GNU General Public License, version 3 (GPL-3.0)
Categories	Search Business Logic Libraries
GroupId	com.actelion.research
ArtifactId	orbit-image-analysis
Last Version	3.15
Release Date	Jul 11, 2019
Type	jar
Description	orbit-image-analysis Orbit, a versatile image analysis software for biological image-based quantification
Project URL	http://www.orbit.bio
Source Code Management	https://github.com/mstritt/orbit-image-analysis

Download orbit-image-analysis

Filename	Size
orbit-image-analysis-3.15.pom
orbit-image-analysis-3.15.jar	4 MB
orbit-image-analysis-3.15-sources.jar	1 MB
orbit-image-analysis-3.15-javadoc.jar	2 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.actelion.research/orbit-image-analysis/ -->
<dependency>
    <groupId>com.actelion.research</groupId>
    <artifactId>orbit-image-analysis</artifactId>
    <version>3.15</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.actelion.research/orbit-image-analysis/
implementation 'com.actelion.research:orbit-image-analysis:3.15'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.actelion.research/orbit-image-analysis/
implementation ("com.actelion.research:orbit-image-analysis:3.15")

Apache Buildr

'com.actelion.research:orbit-image-analysis:jar:3.15'

Apache Ivy

<dependency org="com.actelion.research" name="orbit-image-analysis" rev="3.15">
  <artifact name="orbit-image-analysis" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.actelion.research', module='orbit-image-analysis', version='3.15')
)

Scala SBT

libraryDependencies += "com.actelion.research" % "orbit-image-analysis" % "3.15"

Leiningen

[com.actelion.research/orbit-image-analysis "3.15"]

Dependencies

compile (41)

Group / Artifact	Type	Version
com.actelion.research : lib-orbit-common	jar	1.2.12
com.actelion.research : image-provider-omero	jar	1.6.1
com.actelion.research : map-reduce-generic	jar	1.0.10
net.java.dev.jna : jna	jar	4.5.1
org.quartz-scheduler : quartz	jar	2.1.1
org.sonatype.sisu.inject : cglib	jar	2.2.1-v20090111
io.dropwizard.metrics : metrics-core	jar	3.1.2
io.dropwizard.metrics : metrics-jvm	jar	3.1.2
io.dropwizard.metrics : metrics-graphite	jar	3.1.2
com.thoughtworks.xstream : xstream	jar	1.4.9
org.jaitools : jt-utils	jar	1.4.0
com.sun.media » jai-codec	jar	1.1.3
javax.media » jai-core	jar	1.1.3
com.github.jai-imageio : jai-imageio-core	jar	1.3.1
com.github.jai-imageio : jai-imageio-jpeg2000	jar	1.3.0
org.swinglabs : swingx	jar	1.6.1
com.github.insubstantial : substance	jar	7.3
com.github.insubstantial : substance-flamingo	jar	7.3
com.google.guava : guava	jar	20.0
org.apache.commons : commons-math3	jar	3.6.1
com.googlecode.matrix-toolkits-java : mtj	jar	1.0.4
nz.ac.waikato.cms.weka : weka-stable	jar	3.8.0
nz.ac.waikato.cms.weka.thirdparty : bounce	jar	0.18
com.github.fommil.netlib : core	jar	1.1.2
com.github.fommil.netlib : generator	jar	1.1.2
com.github.fommil.netlib : native_system-java	jar	1.1
gov.nih.imagej : imagej	jar	1.46
de.biomedical-imaging.ij : ij_blob	jar	1.4.9
org.codelibs : jcifs	jar	1.3.18.1
ome » formats-gpl	jar	6.1.1
net.imglib2 : imglib2	jar	3.2.1
org.codehaus.groovy : groovy-all	jar	2.5.7
org.codehaus.gpars : gpars	jar	1.2.1
com.fifesoft : rsyntaxtextarea	jar	3.0.3
com.fifesoft : autocomplete	jar	3.0.0
ch.qos.logback : logback-classic	jar	1.1.7
net.java.linoleum : jlfgr	jar	1_0
sc.fiji » legacy-imglib1	jar	2.0.0-SNAPSHOT
org.xerial : sqlite-jdbc	jar	3.21.0
org.tensorflow : tensorflow	jar	1.4.0
org.apache.httpcomponents : httpclient	jar	4.5.6

test (1)

Group / Artifact	Type	Version
junit : junit	jar	[4.0,)

Project Modules

There are no modules declared in this project.

Orbit Image Analysis

A versatile image analysis software for biological image-based quantification.

News:

• 3.64: "illegal argument" constructor initialization bugfix, support for Omero/websockets, added scrollbars for class admin frame
• 3.63: bugfix for Orbit not starting up if OmeroOrbit.properties.template was not existing in home directory
• 3.62: using image-provider-omero:1.7.2 for Omero 5.6.x, new keyboard shortcuts, bugfixes

Available backends:

• Image provider local (local file system via Bioformats)
• Omero image server (image-provider-omero)

Scaleout via

• Spark scaleout (map-reduce-exec-spark)

Use gradle to build

Generic jar:

gradle jar
java -XX:MaxPermSize=150m -Djavax.xml.parsers.DocumentBuilderFactory=com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderFactoryImpl -cp "build/libs/orbit-image-analysis.jar;build/libs/lib/*" com.actelion.research.orbit.imageAnalysis.components.OrbitImageAnalysis

License: GPLv3

Website: http://www.orbit.bio

Versions

Version
3.15 Jul 11, 2019
3.08 Jan 4, 2019
3.06 Oct 4, 2018
3.05 Aug 3, 2018
3.03 Jun 15, 2018
3.01 Jun 1, 2018
3.0 May 18, 2018
2.70 Nov 3, 2017
2.66 Jul 21, 2017
2.65 Jul 13, 2017
2.55 May 8, 2017
2.53 Apr 7, 2017
2.52 Apr 7, 2017
2.43 Dec 16, 2016
2.42 Nov 11, 2016
2.41 Nov 7, 2016
2.40 Oct 28, 2016
2.30 Aug 22, 2016
2.8 Feb 5, 2018