AddGenesAndTranscriptsToGtf

License	MIT
GroupId	com.github.biopet
ArtifactId	addgenesandtranscriptstogtf_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	AddGenesAndTranscriptsToGtf AddGenesAndTranscriptsToGtf
Project URL	https://github.com/biopet/addgenesandtranscriptstogtf
Project Organization	Biopet
Source Code Management	https://github.com/biopet/addgenesandtranscriptstogtf

Download addgenesandtranscriptstogtf_2.11

Filename	Size
addgenesandtranscriptstogtf_2.11-0.1.pom
addgenesandtranscriptstogtf_2.11-0.1.jar	30 KB
addgenesandtranscriptstogtf_2.11-0.1-sources.jar	4 KB
addgenesandtranscriptstogtf_2.11-0.1-javadoc.jar	355 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/addgenesandtranscriptstogtf_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>addgenesandtranscriptstogtf_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/addgenesandtranscriptstogtf_2.11/
implementation 'com.github.biopet:addgenesandtranscriptstogtf_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/addgenesandtranscriptstogtf_2.11/
implementation ("com.github.biopet:addgenesandtranscriptstogtf_2.11:0.1")

Apache Buildr

'com.github.biopet:addgenesandtranscriptstogtf_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="addgenesandtranscriptstogtf_2.11" rev="0.1">
  <artifact name="addgenesandtranscriptstogtf_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='addgenesandtranscriptstogtf_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "addgenesandtranscriptstogtf_2.11" % "0.1"

Leiningen

[com.github.biopet/addgenesandtranscriptstogtf_2.11 "0.1"]

Dependencies

compile (4)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : ngs-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

AddGenesAndTranscriptsToGtf

This tool repairs a broken GTF file that does not contain all genes and transcripts. A proper GTF file lists genes, transcripts and exons. However some tools only add exons to the GTF file. AddGenesAndTranscriptsToGtf adds genes and transcripts to a GTF file, based on the exons available in an input GTF file.

Documentation

For documentation and manuals visit our github.io page.

About

AddGenesAndTranscriptsToGtf is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to AddGenesAndTranscriptsToGtf, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018