AnnotateVcfWithBed

License	MIT
GroupId	com.github.biopet
ArtifactId	annotatevcfwithbed_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	AnnotateVcfWithBed AnnotateVcfWithBed
Project URL	https://github.com/biopet/annotatevcfwithbed
Project Organization	Biopet
Source Code Management	https://github.com/biopet/annotatevcfwithbed

Download annotatevcfwithbed_2.11

Filename	Size
annotatevcfwithbed_2.11-0.1.pom
annotatevcfwithbed_2.11-0.1.jar	22 KB
annotatevcfwithbed_2.11-0.1-sources.jar	4 KB
annotatevcfwithbed_2.11-0.1-javadoc.jar	356 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/annotatevcfwithbed_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>annotatevcfwithbed_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/annotatevcfwithbed_2.11/
implementation 'com.github.biopet:annotatevcfwithbed_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/annotatevcfwithbed_2.11/
implementation ("com.github.biopet:annotatevcfwithbed_2.11:0.1")

Apache Buildr

'com.github.biopet:annotatevcfwithbed_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="annotatevcfwithbed_2.11" rev="0.1">
  <artifact name="annotatevcfwithbed_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='annotatevcfwithbed_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "annotatevcfwithbed_2.11" % "0.1"

Leiningen

[com.github.biopet/annotatevcfwithbed_2.11 "0.1"]

Dependencies

compile (4)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : ngs-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

AnnotateVcfWithBed

This tool to annotates a vcf file using the input from a bed file. The name, description and type of vcf field can be set with the tool.

Documentation

For documentation and manuals visit our github.io page.

About

AnnotateVcfWithBed is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to AnnotateVcfWithBed, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018