BaseCounter

License	MIT
GroupId	com.github.biopet
ArtifactId	basecounter_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	BaseCounter BaseCounter
Project URL	https://github.com/biopet/basecounter
Project Organization	Biopet
Source Code Management	https://github.com/biopet/basecounter

Download basecounter_2.11

Filename	Size
basecounter_2.11-0.1.pom
basecounter_2.11-0.1.jar	125 KB
basecounter_2.11-0.1-sources.jar	8 KB
basecounter_2.11-0.1-javadoc.jar	373 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/basecounter_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>basecounter_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/basecounter_2.11/
implementation 'com.github.biopet:basecounter_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/basecounter_2.11/
implementation ("com.github.biopet:basecounter_2.11:0.1")

Apache Buildr

'com.github.biopet:basecounter_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="basecounter_2.11" rev="0.1">
  <artifact name="basecounter_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='basecounter_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "basecounter_2.11" % "0.1"

Leiningen

[com.github.biopet/basecounter_2.11 "0.1"]

Dependencies

compile (5)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : ngs-utils_2.11	jar	0.3
com.github.broadinstitute : picard	jar	2.11.0
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

BaseCounter

BaseCounter counts the bases from genes and transcripts and outputs information on the counts in exonic and intronic regions as well as information on the counts on the sense and antisense strands.

Documentation

For documentation and manuals visit our github.io page.

About

BaseCounter is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of BIOPET pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to BaseCounter, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018