JarCasting
JarCasting JarCasting

CorrectRefAlleles


License

License

MIT
GroupId

GroupId

com.github.biopet
ArtifactId

ArtifactId

correctrefalleles_2.11
Last Version

Last Version

0.1
Release Date

Release Date
Type

Type

jar
Description

Description

CorrectRefAlleles
CorrectRefAlleles
Project URL

Project URL

https://github.com/biopet/correctrefalleles
Project Organization

Project Organization

Biopet
Source Code Management

Source Code Management

https://github.com/biopet/correctrefalleles

Download correctrefalleles_2.11

Filename Size
correctrefalleles_2.11-0.1.pom
correctrefalleles_2.11-0.1.jar 21 KB
correctrefalleles_2.11-0.1-sources.jar 4 KB
correctrefalleles_2.11-0.1-javadoc.jar 356 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/com.github.biopet/correctrefalleles_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>correctrefalleles_2.11</artifactId>
    <version>0.1</version>
</dependency>
// https://jarcasting.com/artifacts/com.github.biopet/correctrefalleles_2.11/
implementation 'com.github.biopet:correctrefalleles_2.11:0.1'
// https://jarcasting.com/artifacts/com.github.biopet/correctrefalleles_2.11/
implementation ("com.github.biopet:correctrefalleles_2.11:0.1")
'com.github.biopet:correctrefalleles_2.11:jar:0.1'
<dependency org="com.github.biopet" name="correctrefalleles_2.11" rev="0.1">
  <artifact name="correctrefalleles_2.11" type="jar" />
</dependency>
@Grapes(
@Grab(group='com.github.biopet', module='correctrefalleles_2.11', version='0.1')
)
libraryDependencies += "com.github.biopet" % "correctrefalleles_2.11" % "0.1"
[com.github.biopet/correctrefalleles_2.11 "0.1"]

Dependencies

compile (4)

Group / Artifact Type Version
org.scala-lang : scala-library jar 2.11.12
com.github.biopet : tool-utils_2.11 jar 0.3
com.github.biopet : ngs-utils_2.11 jar 0.3
com.github.biopet : tool-test-utils_2.11 jar 0.2.1

Project Modules

There are no modules declared in this project.

CorrectRefAlleles

This tool corrects the reference alleles in a VCF file. Some tools switch the REF and ALT alleles when creating a vcf. This tool checks what the reference allele is at the given position. It then checks whether this matches up with the REF and ALT column and switches them if necessary.

Documentation

For documentation and manuals visit our github.io page.

About

CorrectRefAlleles is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to CorrectRefAlleles, please use the github issue tracker or contact the SASC team directly at: [email protected].

com.github.biopet

Biopet

Versions

Version
0.1