ExtractAdaptersFastqc

License	MIT
GroupId	com.github.biopet
ArtifactId	extractadaptersfastqc_2.11
Last Version	0.2
Release Date	Feb 27, 2018
Type	jar
Description	ExtractAdaptersFastqc ExtractAdaptersFastqc
Project URL	https://github.com/biopet/extractadaptersfastqc
Project Organization	Biopet
Source Code Management	https://github.com/biopet/extractadaptersfastqc

Download extractadaptersfastqc_2.11

Filename	Size
extractadaptersfastqc_2.11-0.2.pom
extractadaptersfastqc_2.11-0.2.jar	63 KB
extractadaptersfastqc_2.11-0.2-sources.jar	6 KB
extractadaptersfastqc_2.11-0.2-javadoc.jar	366 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/extractadaptersfastqc_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>extractadaptersfastqc_2.11</artifactId>
    <version>0.2</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/extractadaptersfastqc_2.11/
implementation 'com.github.biopet:extractadaptersfastqc_2.11:0.2'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/extractadaptersfastqc_2.11/
implementation ("com.github.biopet:extractadaptersfastqc_2.11:0.2")

Apache Buildr

'com.github.biopet:extractadaptersfastqc_2.11:jar:0.2'

Apache Ivy

<dependency org="com.github.biopet" name="extractadaptersfastqc_2.11" rev="0.2">
  <artifact name="extractadaptersfastqc_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='extractadaptersfastqc_2.11', version='0.2')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "extractadaptersfastqc_2.11" % "0.2"

Leiningen

[com.github.biopet/extractadaptersfastqc_2.11 "0.2"]

Dependencies

compile (4)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : ngs-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

ExtractAdaptersFastqc

ExtractAdaptersFastqc reads which adapter sequences where found from a FastQC raw report. These sequences can be used as input for a QC tool such as cutadapt. The sequences can be output in plain text format with a newline character as a separator between the sequences. Alternatively the sequences can be output in FASTA format.

Documentation

For documentation and manuals visit our github.io page.

About

ExtractAdaptersFastqc is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to ExtractAdaptersFastqc, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.2 Feb 27, 2018
0.1 Jan 19, 2018