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FindOverlapMatch


License

License

MIT
GroupId

GroupId

com.github.biopet
ArtifactId

ArtifactId

findoverlapmatch_2.11
Last Version

Last Version

0.1
Release Date

Release Date
Type

Type

jar
Description

Description

FindOverlapMatch
FindOverlapMatch
Project URL

Project URL

https://github.com/biopet/findoverlapmatch
Project Organization

Project Organization

Biopet
Source Code Management

Source Code Management

https://github.com/biopet/findoverlapmatch

Download findoverlapmatch_2.11

Filename Size
findoverlapmatch_2.11-0.1.pom
findoverlapmatch_2.11-0.1.jar 59 KB
findoverlapmatch_2.11-0.1-sources.jar 5 KB
findoverlapmatch_2.11-0.1-javadoc.jar 358 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/com.github.biopet/findoverlapmatch_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>findoverlapmatch_2.11</artifactId>
    <version>0.1</version>
</dependency>
// https://jarcasting.com/artifacts/com.github.biopet/findoverlapmatch_2.11/
implementation 'com.github.biopet:findoverlapmatch_2.11:0.1'
// https://jarcasting.com/artifacts/com.github.biopet/findoverlapmatch_2.11/
implementation ("com.github.biopet:findoverlapmatch_2.11:0.1")
'com.github.biopet:findoverlapmatch_2.11:jar:0.1'
<dependency org="com.github.biopet" name="findoverlapmatch_2.11" rev="0.1">
  <artifact name="findoverlapmatch_2.11" type="jar" />
</dependency>
@Grapes(
@Grab(group='com.github.biopet', module='findoverlapmatch_2.11', version='0.1')
)
libraryDependencies += "com.github.biopet" % "findoverlapmatch_2.11" % "0.1"
[com.github.biopet/findoverlapmatch_2.11 "0.1"]

Dependencies

compile (3)

Group / Artifact Type Version
org.scala-lang : scala-library jar 2.11.12
com.github.biopet : tool-utils_2.11 jar 0.3
com.github.biopet : tool-test-utils_2.11 jar 0.2.1

Project Modules

There are no modules declared in this project.

FindOverlapMatch

FindOverlapMatch looks for overlapping samples in a sample matrix. An example of a tool that creates such a matrix is VcfStats.

It compares samples and lists similar samples based on a cutoff point. It can also check if columns in a sample matrix match a certain regex.

Documentation

For documentation and manuals visit our github.io page.

About

FindOverlapMatch is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to FindOverlapMatch, please use the github issue tracker or contact the SASC team directly at: [email protected].

com.github.biopet

Biopet

Versions

Version
0.1