NcbiReportToContigMap

License	MIT
GroupId	com.github.biopet
ArtifactId	ncbireporttocontigmap_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	NcbiReportToContigMap NcbiReportToContigMap
Project URL	https://github.com/biopet/ncbireporttocontigmap
Project Organization	Biopet
Source Code Management	https://github.com/biopet/ncbireporttocontigmap

Download ncbireporttocontigmap_2.11

Filename	Size
ncbireporttocontigmap_2.11-0.1.pom
ncbireporttocontigmap_2.11-0.1.jar	26 KB
ncbireporttocontigmap_2.11-0.1-sources.jar	4 KB
ncbireporttocontigmap_2.11-0.1-javadoc.jar	356 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/ncbireporttocontigmap_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>ncbireporttocontigmap_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/ncbireporttocontigmap_2.11/
implementation 'com.github.biopet:ncbireporttocontigmap_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/ncbireporttocontigmap_2.11/
implementation ("com.github.biopet:ncbireporttocontigmap_2.11:0.1")

Apache Buildr

'com.github.biopet:ncbireporttocontigmap_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="ncbireporttocontigmap_2.11" rev="0.1">
  <artifact name="ncbireporttocontigmap_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='ncbireporttocontigmap_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "ncbireporttocontigmap_2.11" % "0.1"

Leiningen

[com.github.biopet/ncbireporttocontigmap_2.11 "0.1"]

Dependencies

compile (3)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

NcbiReportToContigMap

This tool generates a contig map file using the information from a NCBI assembly report. It has an option to select which column in the NCBI report should be used.

Documentation

For documentation and manuals visit our github.io page.

About

NcbiReportToContigMap is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to NcbiReportToContigMap, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018