RefflatStats

License	MIT
GroupId	com.github.biopet
ArtifactId	refflatstats_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	RefflatStats RefflatStats
Project URL	https://github.com/biopet/refflatstats
Project Organization	Biopet
Source Code Management	https://github.com/biopet/refflatstats

Download refflatstats_2.11

Filename	Size
refflatstats_2.11-0.1.pom
refflatstats_2.11-0.1.jar	65 KB
refflatstats_2.11-0.1-sources.jar	8 KB
refflatstats_2.11-0.1-javadoc.jar	368 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/refflatstats_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>refflatstats_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/refflatstats_2.11/
implementation 'com.github.biopet:refflatstats_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/refflatstats_2.11/
implementation ("com.github.biopet:refflatstats_2.11:0.1")

Apache Buildr

'com.github.biopet:refflatstats_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="refflatstats_2.11" rev="0.1">
  <artifact name="refflatstats_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='refflatstats_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "refflatstats_2.11" % "0.1"

Leiningen

[com.github.biopet/refflatstats_2.11 "0.1"]

Dependencies

compile (5)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.11
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1
com.github.biopet : ngs-utils_2.11	jar	0.3
com.github.broadinstitute : picard	jar	2.14.1

Project Modules

There are no modules declared in this project.

RefflatStats

RefflatStats generates stats about an annotation refflat file. It outputs stats files on genes, transcripts, exons and introns. Information includes start,end information, GC content, number of exonic regions etc.

Documentation

For documentation and manuals visit our github.io page.

About

RefflatStats is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to RefflatStats, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018