JarCasting
JarCasting JarCasting

ValidateAnnotation


License

License

MIT
GroupId

GroupId

com.github.biopet
ArtifactId

ArtifactId

validateannotation_2.11
Last Version

Last Version

0.1
Release Date

Release Date
Type

Type

jar
Description

Description

ValidateAnnotation
ValidateAnnotation
Project URL

Project URL

https://github.com/biopet/validateannotation
Project Organization

Project Organization

Biopet
Source Code Management

Source Code Management

https://github.com/biopet/validateannotation

Download validateannotation_2.11

Filename Size
validateannotation_2.11-0.1.pom
validateannotation_2.11-0.1.jar 30 KB
validateannotation_2.11-0.1-sources.jar 4 KB
validateannotation_2.11-0.1-javadoc.jar 356 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/com.github.biopet/validateannotation_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>validateannotation_2.11</artifactId>
    <version>0.1</version>
</dependency>
// https://jarcasting.com/artifacts/com.github.biopet/validateannotation_2.11/
implementation 'com.github.biopet:validateannotation_2.11:0.1'
// https://jarcasting.com/artifacts/com.github.biopet/validateannotation_2.11/
implementation ("com.github.biopet:validateannotation_2.11:0.1")
'com.github.biopet:validateannotation_2.11:jar:0.1'
<dependency org="com.github.biopet" name="validateannotation_2.11" rev="0.1">
  <artifact name="validateannotation_2.11" type="jar" />
</dependency>
@Grapes(
@Grab(group='com.github.biopet', module='validateannotation_2.11', version='0.1')
)
libraryDependencies += "com.github.biopet" % "validateannotation_2.11" % "0.1"
[com.github.biopet/validateannotation_2.11 "0.1"]

Dependencies

compile (5)

Group / Artifact Type Version
org.scala-lang : scala-library jar 2.11.11
com.github.biopet : tool-utils_2.11 jar 0.3
com.github.biopet : tool-test-utils_2.11 jar 0.2.1
com.github.biopet : ngs-utils_2.11 jar 0.3
com.github.biopet : gtftorefflat_2.11 jar 0.1

Project Modules

There are no modules declared in this project.

ValidateAnnotation

ValidateAnnotationvalidates whether an annotation file is correct. It checks whether all the annotated contigs are present on the reference. It can check gtf or refflat files. It can also check both, in which case it will also check for dissimilarities between the refflat and GTF files.

Documentation

For documentation and manuals visit our github.io page.

About

ValidateAnnotation is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to ValidateAnnotation, please use the github issue tracker or contact the SASC team directly at: [email protected].

com.github.biopet

Biopet

Versions

Version
0.1