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validatefastq


License

License

MIT
GroupId

GroupId

com.github.biopet
ArtifactId

ArtifactId

validatefastq_2.11
Last Version

Last Version

0.1.1
Release Date

Release Date
Type

Type

jar
Description

Description

validatefastq
validatefastq
Project URL

Project URL

https://github.com/biopet/validatefastq
Project Organization

Project Organization

Biopet
Source Code Management

Source Code Management

https://github.com/biopet/validatefastq

Download validatefastq_2.11

Filename Size
validatefastq_2.11-0.1.1.pom
validatefastq_2.11-0.1.1.jar 26 KB
validatefastq_2.11-0.1.1-sources.jar 5 KB
validatefastq_2.11-0.1.1-javadoc.jar 356 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/com.github.biopet/validatefastq_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>validatefastq_2.11</artifactId>
    <version>0.1.1</version>
</dependency>
// https://jarcasting.com/artifacts/com.github.biopet/validatefastq_2.11/
implementation 'com.github.biopet:validatefastq_2.11:0.1.1'
// https://jarcasting.com/artifacts/com.github.biopet/validatefastq_2.11/
implementation ("com.github.biopet:validatefastq_2.11:0.1.1")
'com.github.biopet:validatefastq_2.11:jar:0.1.1'
<dependency org="com.github.biopet" name="validatefastq_2.11" rev="0.1.1">
  <artifact name="validatefastq_2.11" type="jar" />
</dependency>
@Grapes(
@Grab(group='com.github.biopet', module='validatefastq_2.11', version='0.1.1')
)
libraryDependencies += "com.github.biopet" % "validatefastq_2.11" % "0.1.1"
[com.github.biopet/validatefastq_2.11 "0.1.1"]

Dependencies

compile (4)

Group / Artifact Type Version
org.scala-lang : scala-library jar 2.11.11
com.github.biopet : tool-utils_2.11 jar 0.3
com.github.biopet : tool-test-utils_2.11 jar 0.2.1
com.github.biopet : ngs-utils_2.11 jar 0.3

Project Modules

There are no modules declared in this project.

ValidateFastq

This tool validates a FASTQ file. When data is paired it can also validate a pair of FASTQ files. ValidateFastq will check if the FASTQ is in valid FASTQ format. This includes checking for duplicate reads and checking whether a pair of FASTQ files contains the same amount of reads and headers match. It also check whether the quality encodings are correct and outputs the most likely encoding format (Sanger, Solexa etc.).

Documentation

For documentation and manuals visit our github.io page.

About

ValidateFastq is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to ValidateFastq, please use the github issue tracker or contact the SASC team directly at: [email protected].

com.github.biopet

Biopet

Versions

Version
0.1.1
0.1