vcftotsv

License	MIT
GroupId	com.github.biopet
ArtifactId	vcftotsv_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	vcftotsv vcftotsv
Project URL	https://github.com/biopet/vcftotsv
Project Organization	Biopet
Source Code Management	https://github.com/biopet/vcftotsv

Download vcftotsv_2.11

Filename	Size
vcftotsv_2.11-0.1.pom
vcftotsv_2.11-0.1.jar	51 KB
vcftotsv_2.11-0.1-sources.jar	6 KB
vcftotsv_2.11-0.1-javadoc.jar	359 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/vcftotsv_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>vcftotsv_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/vcftotsv_2.11/
implementation 'com.github.biopet:vcftotsv_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/vcftotsv_2.11/
implementation ("com.github.biopet:vcftotsv_2.11:0.1")

Apache Buildr

'com.github.biopet:vcftotsv_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="vcftotsv_2.11" rev="0.1">
  <artifact name="vcftotsv_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='vcftotsv_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "vcftotsv_2.11" % "0.1"

Leiningen

[com.github.biopet/vcftotsv_2.11 "0.1"]

Dependencies

compile (4)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.11
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1
com.github.biopet : ngs-utils_2.11	jar	0.3

Project Modules

There are no modules declared in this project.

VcfToTsv

This tool converts a vcf file to a Tab Separated Values (TSV) file. For every key in the INFO column of the VCF file, a separate column will be created with the corresponding values. The user can select the keys that will be parsed into the output TSV file. This can be useful in the case a program only accepts a TSV file for downstream analysis.

Documentation

For documentation and manuals visit our github.io page.

About

VcfToTsv is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to VcfToTsv, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018