xcnvtobed

License	MIT
GroupId	com.github.biopet
ArtifactId	xcnvtobed_2.11
Last Version	0.1
Release Date	Feb 27, 2018
Type	jar
Description	xcnvtobed xcnvtobed
Project URL	https://github.com/biopet/xcnvtobed
Project Organization	Biopet
Source Code Management	https://github.com/biopet/xcnvtobed

Download xcnvtobed_2.11

Filename	Size
xcnvtobed_2.11-0.1.pom
xcnvtobed_2.11-0.1.jar	23 KB
xcnvtobed_2.11-0.1-sources.jar	5 KB
xcnvtobed_2.11-0.1-javadoc.jar	360 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/com.github.biopet/xcnvtobed_2.11/ -->
<dependency>
    <groupId>com.github.biopet</groupId>
    <artifactId>xcnvtobed_2.11</artifactId>
    <version>0.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/com.github.biopet/xcnvtobed_2.11/
implementation 'com.github.biopet:xcnvtobed_2.11:0.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/com.github.biopet/xcnvtobed_2.11/
implementation ("com.github.biopet:xcnvtobed_2.11:0.1")

Apache Buildr

'com.github.biopet:xcnvtobed_2.11:jar:0.1'

Apache Ivy

<dependency org="com.github.biopet" name="xcnvtobed_2.11" rev="0.1">
  <artifact name="xcnvtobed_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='com.github.biopet', module='xcnvtobed_2.11', version='0.1')
)

Scala SBT

libraryDependencies += "com.github.biopet" % "xcnvtobed_2.11" % "0.1"

Leiningen

[com.github.biopet/xcnvtobed_2.11 "0.1"]

Dependencies

compile (3)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.11
com.github.biopet : tool-utils_2.11	jar	0.3
com.github.biopet : tool-test-utils_2.11	jar	0.2.1

Project Modules

There are no modules declared in this project.

XcnvToBed

This tool converts a sample track within an XHMM XCNV file to a BED track. In the output the fourth column indicates the type of CNV for the region: deletion (-1), normal (0) or duplication (1).

Documentation

For documentation and manuals visit our github.io page.

About

XcnvToBed is part of BIOPET tool suite that is developed at LUMC by the SASC team. Each tool in the BIOPET tool suite is meant to offer a standalone function that can be used to perform a dedicate data analysis task or added as part of a pipeline, for example the SASC team's biowdl pipelines.

All tools in the BIOPET tool suite are Free/Libre and Open Source Software.

Contact

For any question related to XcnvToBed, please use the github issue tracker or contact the SASC team directly at: [email protected].

Biopet

Versions

Version
0.1 Feb 27, 2018