ga4gh-starter-kit-drs

Starter Kit server implementation of the GA4GH Data Repository Service (DRS) specification

License	The Apache Software License, Version 2.0
GroupId	org.ga4gh
ArtifactId	ga4gh-starter-kit-drs
Last Version	0.1.3
Release Date	May 4, 2021
Type	jar
Description	ga4gh-starter-kit-drs Starter Kit server implementation of the GA4GH Data Repository Service (DRS) specification
Project URL	https://github.com/ga4gh/ga4gh-starter-kit-drs
Source Code Management	https://github.com/ga4gh/ga4gh-starter-kit-drs

Download ga4gh-starter-kit-drs

Filename	Size
ga4gh-starter-kit-drs-0.1.3.pom
ga4gh-starter-kit-drs-0.1.3.jar	43 KB
ga4gh-starter-kit-drs-0.1.3-tests.jar	3 MB
ga4gh-starter-kit-drs-0.1.3-sources.jar	23 KB
ga4gh-starter-kit-drs-0.1.3-javadoc.jar	516 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.ga4gh/ga4gh-starter-kit-drs/ -->
<dependency>
    <groupId>org.ga4gh</groupId>
    <artifactId>ga4gh-starter-kit-drs</artifactId>
    <version>0.1.3</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.ga4gh/ga4gh-starter-kit-drs/
implementation 'org.ga4gh:ga4gh-starter-kit-drs:0.1.3'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.ga4gh/ga4gh-starter-kit-drs/
implementation ("org.ga4gh:ga4gh-starter-kit-drs:0.1.3")

Apache Buildr

'org.ga4gh:ga4gh-starter-kit-drs:jar:0.1.3'

Apache Ivy

<dependency org="org.ga4gh" name="ga4gh-starter-kit-drs" rev="0.1.3">
  <artifact name="ga4gh-starter-kit-drs" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.ga4gh', module='ga4gh-starter-kit-drs', version='0.1.3')
)

Scala SBT

libraryDependencies += "org.ga4gh" % "ga4gh-starter-kit-drs" % "0.1.3"

Leiningen

[org.ga4gh/ga4gh-starter-kit-drs "0.1.3"]

Dependencies

compile (18)

Group / Artifact	Type	Version
org.springframework.boot : spring-boot-starter-aop	jar
org.springframework.boot : spring-boot-starter-web	jar
commons-cli : commons-cli	jar	1.4
commons-io : commons-io	jar	2.8.0
com.fasterxml.jackson.core : jackson-core	jar	2.12.1
com.fasterxml.jackson.dataformat : jackson-dataformat-yaml	jar	2.11.1
com.fasterxml.jackson.datatype : jackson-datatype-jsr310	jar	2.9.4
org.hibernate : hibernate-core	jar	5.4.11.Final
org.springframework : spring-orm	jar	5.1.6.RELEASE
org.hibernate.javax.persistence : hibernate-jpa-2.1-api	jar	1.0.0.Final
org.postgresql : postgresql	jar	42.2.10
javax.xml.bind : jaxb-api	jar	2.2.8
com.fasterxml.jackson.core : jackson-annotations	jar	2.10.2
com.fasterxml.jackson.core : jackson-databind	jar	2.10.2
com.fasterxml.jackson.datatype : jackson-datatype-hibernate4	jar	2.4.4
org.springdoc : springdoc-openapi-ui	jar	1.2.33
org.xerial : sqlite-jdbc	jar	3.8.11.2
org.ga4gh : ga4gh-starter-kit-common	jar	0.3.3

runtime (1)

Group / Artifact	Type	Version
com.google.guava : guava	jar	28.1-jre

test (3)

Group / Artifact	Type	Version
org.springframework.boot : spring-boot-starter-test	jar
org.springframework.security : spring-security-test	jar
org.testng : testng	jar	7.0.0

Project Modules

There are no modules declared in this project.

GA4GH Starter Kit DRS Server

Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification

Installation

Dependencies:

• Java 11+
• Gradle 6.1.1+

./gradlew build

Usage

./gradlew bootRun
./gradlew bootRun --args="--config ./src/test/resources/config/test-config-00.yml"

Test Datasets

The following datasets are currently contained in this repo for testing:

• Test data from the htsjdk
• Open dataset of 384 Phenopackets: Paper, Dataset

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

Versions

Version
0.1.3 May 4, 2021
0.1.2 May 4, 2021
0.1.1 Apr 30, 2021