loci

License	Apache 2.0
GroupId	org.hammerlab.genomics
ArtifactId	loci_2.11
Last Version	2.2.0
Release Date	Jun 17, 2018
Type	jar
Description	loci loci
Project URL	https://github.com/hammerlab/genomic-loci
Project Organization	org.hammerlab.genomics
Source Code Management	https://github.com/hammerlab/genomic-loci

Download loci_2.11

Filename	Size
loci_2.11-2.2.0.pom
loci_2.11-2.2.0.jar	2 MB
loci_2.11-2.2.0-tests.jar	162 KB
loci_2.11-2.2.0-tests-sources.jar	25 KB
loci_2.11-2.2.0-tests-javadoc.jar	541 KB
loci_2.11-2.2.0-sources.jar	18 KB
loci_2.11-2.2.0-javadoc.jar	482 KB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.hammerlab.genomics/loci_2.11/ -->
<dependency>
    <groupId>org.hammerlab.genomics</groupId>
    <artifactId>loci_2.11</artifactId>
    <version>2.2.0</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.hammerlab.genomics/loci_2.11/
implementation 'org.hammerlab.genomics:loci_2.11:2.2.0'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.hammerlab.genomics/loci_2.11/
implementation ("org.hammerlab.genomics:loci_2.11:2.2.0")

Apache Buildr

'org.hammerlab.genomics:loci_2.11:jar:2.2.0'

Apache Ivy

<dependency org="org.hammerlab.genomics" name="loci_2.11" rev="2.2.0">
  <artifact name="loci_2.11" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.hammerlab.genomics', module='loci_2.11', version='2.2.0')
)

Scala SBT

libraryDependencies += "org.hammerlab.genomics" % "loci_2.11" % "2.2.0"

Leiningen

[org.hammerlab.genomics/loci_2.11 "2.2.0"]

Dependencies

compile (11)

Group / Artifact	Type	Version
org.scala-lang : scala-library	jar	2.11.12
com.google.guava : guava	jar	19.0
com.esotericsoftware.kryo : kryo	jar	2.24.0
com.github.alexarchambault : case-app_2.11	jar	2.0.0-M3
com.github.samtools : htsjdk	jar	2.9.1
org.hammerlab : iterator_2.11	jar	2.2.0
org.hammerlab : paths_2.11	jar	1.5.0
org.hammerlab.genomics : reference_2.11	jar	1.5.0
org.scalautils : scalautils_2.11	jar	2.1.5
org.hammerlab : spark-util_2.11	jar	3.0.0
org.hammerlab : string-utils_2.11	jar	1.2.0

provided (2)

Group / Artifact	Type	Version
org.apache.spark : spark-core_2.11	jar	2.2.1
org.apache.hadoop : hadoop-client	jar	2.7.3

test (4)

Group / Artifact	Type	Version
org.scalatest : scalatest_2.11	jar	3.0.4
org.hammerlab.test : base_2.11	jar	1.0.1
org.hammerlab : spark-tests_2.11	jar	2.3.3
org.hammerlab.genomics : reference_2.11	jar	1.5.0

Project Modules

There are no modules declared in this project.

genomic-loci

Utilities for working with genomic loci.

• parsing: utilities for parsing string-representations of loci.
• set: LociSet data-structure: stores genomic-loci ranges and allows for intersection/containment checks.
• map: LociMap data-structure: allows for mapping genomic ranges to arbitrary values.
• iterator: iterators for traversing genomic loci.

Hammer Lab

We're a lab working to understand and improve the immune response to cancer

Versions

Version
2.2.0 Jun 17, 2018
2.1.0 Jun 14, 2018
2.0.4 Mar 14, 2018
2.0.3 Jan 22, 2018
2.0.2 Jan 18, 2018
2.0.1 Aug 7, 2017
2.0.0 Aug 7, 2017
1.5.8 Jun 20, 2017
1.5.7 Apr 6, 2017
1.5.6 Apr 5, 2017
1.5.5 Apr 4, 2017
1.5.4 Apr 3, 2017
1.5.3 Mar 13, 2017
1.5.2 Feb 5, 2017
1.5.1 Feb 5, 2017
1.5.0 Jan 2, 2017