org.opencb.commons:bioformats

OpenCB commons project contains several Java libs for Bioinformatics

License	GNU GENERAL PUBLIC LICENSE Version 2
Categories	ORM Data
GroupId	org.opencb.commons
ArtifactId	bioformats
Last Version	2.0.0
Release Date	Sep 4, 2014
Type	jar
Description	OpenCB commons project contains several Java libs for Bioinformatics

Download bioformats

Filename	Size
bioformats-2.0.0.pom
bioformats-2.0.0.jar	531 KB
bioformats-2.0.0-sources.jar	402 KB
bioformats-2.0.0-javadoc.jar	2 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.opencb.commons/bioformats/ -->
<dependency>
    <groupId>org.opencb.commons</groupId>
    <artifactId>bioformats</artifactId>
    <version>2.0.0</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.opencb.commons/bioformats/
implementation 'org.opencb.commons:bioformats:2.0.0'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.opencb.commons/bioformats/
implementation ("org.opencb.commons:bioformats:2.0.0")

Apache Buildr

'org.opencb.commons:bioformats:jar:2.0.0'

Apache Ivy

<dependency org="org.opencb.commons" name="bioformats" rev="2.0.0">
  <artifact name="bioformats" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.opencb.commons', module='bioformats', version='2.0.0')
)

Scala SBT

libraryDependencies += "org.opencb.commons" % "bioformats" % "2.0.0"

Leiningen

[org.opencb.commons/bioformats "2.0.0"]

Dependencies

compile (14)

Group / Artifact	Type	Version
org.opencb.commons : commons-lib	jar	2.0.0
com.google.guava : guava	jar	15.0
org.slf4j : slf4j-api	jar	1.7.5
org.slf4j : slf4j-simple Optional	jar	1.7.5
com.fasterxml.jackson.core : jackson-databind Optional	jar	2.2.2
org.utgenome.thirdparty : picard Optional	jar	1.86p
org.xerial : sqlite-jdbc Optional	jar	3.7.2
javax.ws.rs : javax.ws.rs-api	jar	2.0
com.sun.jersey : jersey-client	jar	1.8
com.sun.jersey : jersey-core	jar	1.8
com.sun.jersey.contribs : jersey-multipart	jar	1.8
com.google.protobuf : protobuf-java	jar	2.4.0a
org.glassfish.jersey.core : jersey-client	jar	2.4
org.glassfish.jersey.media : jersey-media-multipart	jar	2.4

test (1)

Group / Artifact	Type	Version
junit : junit	jar	4.11

Project Modules

There are no modules declared in this project.

java-common-libs

This repository contains a set of libraries used by OpenCB projects that use the Java language. It is composed of three parts:

• bioformats: Readers and writers of file formats typically used in bioformatics
• commons: Data structures and utility classes
• math: Mathematical functions

Open source for Computational Biology

Versions

Version
2.0.0 Sep 4, 2014