GATK4

Development on GATK 4

License	Apache 2.0
GroupId	org.broadinstitute
ArtifactId	gatk
Last Version	4.2.6.1
Release Date	Apr 13, 2022
Type	jar
Description	GATK4 Development on GATK 4
Project URL	http://github.com/broadinstitute/gatk

Download gatk

Filename	Size
gatk-4.2.6.1.pom
gatk-4.2.6.1.jar	44 MB
gatk-4.2.6.1-sources.jar	42 MB
gatk-4.2.6.1-javadoc.jar	9 MB

How to add to project

Apache Maven

<!-- https://jarcasting.com/artifacts/org.broadinstitute/gatk/ -->
<dependency>
    <groupId>org.broadinstitute</groupId>
    <artifactId>gatk</artifactId>
    <version>4.2.6.1</version>
</dependency>

Gradle Groovy

// https://jarcasting.com/artifacts/org.broadinstitute/gatk/
implementation 'org.broadinstitute:gatk:4.2.6.1'

Gradle Kotlin

// https://jarcasting.com/artifacts/org.broadinstitute/gatk/
implementation ("org.broadinstitute:gatk:4.2.6.1")

Apache Buildr

'org.broadinstitute:gatk:jar:4.2.6.1'

Apache Ivy

<dependency org="org.broadinstitute" name="gatk" rev="4.2.6.1">
  <artifact name="gatk" type="jar" />
</dependency>

Groovy Grape

@Grapes(
@Grab(group='org.broadinstitute', module='gatk', version='4.2.6.1')
)

Scala SBT

libraryDependencies += "org.broadinstitute" % "gatk" % "4.2.6.1"

Leiningen

[org.broadinstitute/gatk "4.2.6.1"]

Dependencies

runtime (53)

Group / Artifact	Type	Version
org.broadinstitute : barclay	jar	4.0.2
org.aeonbits.owner : owner	jar	1.0.9
com.github.broadinstitute : picard	jar	2.27.1
org.genomicsdb : genomicsdb	jar	1.4.3
com.opencsv : opencsv	jar	3.4
com.google.guava : guava	jar	31.0.1-jre
com.github.samtools : htsjdk	jar	2.24.1
com.google.cloud : google-cloud-nio	jar	0.123.25
com.google.cloud : google-cloud-bigquery	jar	2.9.0
com.google.cloud : google-cloud-bigquerystorage	jar	2.9.1
gov.nist.math.jama : gov.nist.math.jama	jar	1.1.1
com.google.cloud.bigdataoss : gcs-connector	jar	1.9.4-hadoop3
org.apache.logging.log4j : log4j-api	jar	2.17.1
org.apache.logging.log4j : log4j-core	jar	2.17.1
org.apache.logging.log4j : log4j-jcl	jar	2.17.1
org.apache.commons : commons-lang3	jar	3.5
org.apache.commons : commons-math3	jar	3.5
org.apache.commons : commons-collections4	jar	4.1
org.apache.commons : commons-vfs2	jar	2.0
org.apache.commons : commons-configuration2	jar	2.4
org.apache.httpcomponents : httpclient	jar	4.5.12
commons-beanutils : commons-beanutils	jar	1.9.3
commons-io : commons-io	jar	2.5
org.reflections : reflections	jar	0.9.10
it.unimi.dsi : fastutil	jar	7.0.6
org.broadinstitute : hdf5-java-bindings	jar	1.1.0-hdf5_2.11.0
org.broadinstitute : gatk-native-bindings	jar	1.0.0
org.ojalgo : ojalgo	jar	44.0.0
org.ojalgo : ojalgo-commons-math3	jar	1.0.0
org.apache.spark : spark-mllib_2.11	jar	2.4.5
com.thoughtworks.paranamer : paranamer	jar	2.8
org.bdgenomics.bdg-formats : bdg-formats	jar	0.5.0
org.bdgenomics.adam : adam-core-spark2_2.11	jar	0.28.0
org.jgrapht : jgrapht-core	jar	0.9.1
org.disq-bio : disq	jar	0.3.6
org.apache.hadoop : hadoop-client	jar	3.2.1
com.github.jsr203hadoop : jsr203hadoop	jar	1.0.3
de.javakaffee : kryo-serializers	jar	0.41
org.objenesis : objenesis	jar	1.2
com.github.fommil.netlib : netlib-native_ref-osx-x86_64	jar	1.1
com.github.fommil.netlib : netlib-native_ref-linux-x86_64	jar	1.1
com.github.fommil.netlib : netlib-native_system-linux-x86_64	jar	1.1
com.github.fommil.netlib : netlib-native_system-osx-x86_64	jar	1.1
com.esotericsoftware : kryo	jar	3.0.3
com.esotericsoftware : reflectasm	jar	1.10.0
com.intel.gkl : gkl	jar	0.8.8
org.broadinstitute : gatk-bwamem-jni	jar	1.0.4
org.broadinstitute : gatk-fermilite-jni	jar	1.2.0
org.broadinstitute : http-nio	jar	0.1.0-rc1
org.xerial : sqlite-jdbc	jar	3.36.0.3
biz.k11i » xgboost-predictor	jar	0.3.0
net.grey-panther : natural-comparator	jar	1.1
com.fasterxml.jackson.module : jackson-module-scala_2.11	jar	2.9.8

Project Modules

There are no modules declared in this project.

Broad Institute

Broad Institute of MIT and Harvard

Versions

Version
4.2.6.1 Apr 13, 2022
4.2.6.0 Apr 8, 2022
4.2.5.0 Feb 5, 2022
4.2.4.1 Jan 5, 2022
4.2.4.0 Dec 15, 2021
4.2.3.0 Nov 3, 2021
4.2.2.0 Aug 19, 2021
4.2.1.0 Jul 31, 2021
4.2.0.0 Feb 20, 2021
4.1.9.0 Oct 10, 2020
4.1.8.1 Jul 21, 2020
4.1.8.0 Jun 26, 2020
4.1.7.0 Apr 24, 2020
4.1.6.0 Mar 25, 2020
4.1.5.0 Feb 29, 2020
4.1.4.1 Nov 27, 2019
4.1.4.0 Oct 16, 2019
4.1.3.0 Aug 9, 2019
4.1.2.0 Apr 23, 2019
4.1.1.0 Mar 29, 2019
4.1.0.0 Jan 30, 2019
4.0.12.0 Dec 17, 2018
4.0.11.0 Oct 23, 2018
4.0.10.1 Oct 9, 2018
4.0.10.0 Oct 4, 2018
4.0.9.0 Sep 26, 2018
4.0.8.1 Aug 16, 2018
4.0.8.0 Aug 15, 2018
4.0.7.0 Jul 30, 2018
4.0.6.0 Jul 7, 2018
4.0.5.2 Jun 30, 2018
4.0.5.1 Jun 11, 2018
4.0.5.0 Jun 8, 2018
4.0.4.0 Apr 26, 2018
4.0.3.0 Mar 28, 2018
4.0.2.1 Mar 2, 2018
4.0.2.0 Feb 27, 2018
4.0.1.2 Feb 9, 2018
4.0.1.1 Feb 2, 2018
4.0.1.0 Jan 30, 2018
4.0.0.0 Jan 9, 2018
4.beta.2 Jul 20, 2017
4.beta.1 Jun 29, 2017
4.alpha.2 Aug 18, 2016
4.alpha.1 Apr 29, 2016
4.alpha Mar 2, 2016